G1661017 (LOC106589452)


Basic Information

Item Value
gene id G1661017
gene name LOC106589452
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 9391885 ~ 9395929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1900933
GTTGGAAGTGGAACTCCAGGTAGAGGTCGTTGTCGAAGTGAAGTGGGTGTGTCCATATGACGCGGTGGAAGGACAGGACGATGGAGCCGTCGTCCAATAGGAAGTCAAACAGGTACTCATCTGAGTGGAGAGGCCGCACCATCCCATCCTTGTCCCGAATGGCATGGATAGAAAACTCCTTGACTTCTGACGGATCCTGGATGCCCATCTCTGTACACAGCTCTTCCACCACCTCTAGAGCCACCTGGGCACACAGAGTCAATCTGTATCATAATGGTAATtcaagggaggaggggaagaggagaaaaGTAAAGGGAAGGAGACTTGACTTACGCTGAAGCTGCGTATTTTACAGATGAACTCCACTCCGCCTGGCAGCTTGATGGGGAACCGACGAGATTGTCTGCCAGCCTGCAGAGAACAGACACACAGCGACAGCTGTACCGTTTATCTTACATAATAACAAGATATCCACACTTATGTGGAATCCCTGCCTTACCAGTATGGCTTCCATCTCTGCGTGAGAGGGGACGTGTCTGCGACCACCGTGGATCAGAGTCCCGAACATGTTCTCCTTACAGTTTTGAGACAGCTCTGAGATAGAGGATAGACACATACATCATTGCATTAGATACAGAAAAGCTCTGGGgtaacagacacagacacatgtttGAAGGGATCTCCTCTGGGGCATCGCCAATGTGTGAGGGGTGCAGGGCTGTACCTTAATAGGGGTGTGTTGGTCTTGGCTGATGTCTCGTAGGTGGCGTGTGACAGTAGGTGTTcagagtgtgcgtgtgcgtaccTTGGTAGAGGTGTgtggggtcttggctgatgttTTGTAGATGACATGTGATGTAGGGGTTCAGAGTGCCAGAGCAGGGGAAGAACCCTGCTACCAGGTTCAACAGACGCCAACCCCGGGtacatctctctctgtataaCGCATGCGCACACAAGTTAGGAATTGACCCTCTGTACACTACTCGCAGGTAAAGGTTCGTACACAATCTGCCAGCTACTCacttgtgtgtgttgtttgtgatCTGTTTGATCACCTGGCAGTAAATCTCATCTCTCAGAAACTCTTTCTCCTTCCCTaactgaacacacaaacacaatgggaCAGACATGACTCCATGTTTCCATTCAAGCAGCTGGTATCCTCAGTGGGAGTGGGAGGTGAGTGATGGTGTTTGCGTGTGAGCTGTGGGTGTGCAACGGGAGAGGCTCACCATCAAGATATGGCTGACACAGTCTCCCTCAGACGTGTGCCTCCCAAGAGGCTGGTCTCCCATGAACTGCATCACACCttcagagagcgaaagagaagtGGGAAAGGGGAATATTGAGATGAAAGAGGTGCAATGCACACCTCAATAGTGTGCGTCACAGGAGGTTGATGGCACCTTAATCGGGGAGAATtcgctctgttccagccattattatgagccgtcctcccctcagcagcctccactggtgtgcgtgtgcgcgtgtgtgcgtgtgtgtgtgtgtgtgtgtggactcacTCAGGAAGGCCTGGACAGCCAGGCCATTGAGCTCAGGATCATTGTACAGGATGAGGGATTCCTGAATGGGAACCTCTGTGTACTGAAGCACCTCTGAGAAGTTTATACCTCCATTAAGCAGACCTTTACCCTCCATTCTGTgatagagagacaaagggagaaagACGAAGGAGGGGGGATTAtgaaagagggagcgagatggagcgaggaagagagagtcCGAGAGAAAGTACataaggagaaagagaggtaagTATATGTCGTTATGGAAGAGTTATTACACTCAGGAAAATATAGGATTGCATACATCATATAACCTTGTTACCCCTCTCACCTGGTGGCAGTGTCTCTGAAGTATTTCATGGCAAACTCTGTCATCCGGAACGTCTGGGCGTCACTCATCTCACTGCCCTGGACCGATACTTGGACGGAAAGAGCTGACCCCAGCATGGAGCTCCCTCGGCTGGGCTGTGCTGAGCCAGTGTGGGGAGTGGACCTGGGAGCTGGGGGTCTGGTGGCAGCGGGCGGCTTGGAGGCTCTCATGCTCTTCCTCCTCTCGTCGAGGCGGTCAAGGTGGACGTGGTGGTAGTCAGGAGGGGCAGACGGCTGAGTGACGTCGATGGGGAAAAGGCCGGAGCGCCCCCCGATGGAACCGAAACACCAAC
>TU1900934
aatatgtactgtgtaatatgtcatattactgtcatctgatgaagattttcaaaaggttagtgagcgatttatttttttatcctgcgtttgttgattgcatgttttggctattgaaatgagctgtgtctggtggtggttttacatatatatgtgctatgttttcgccgtaaaacattttagaaatctgacttgctggctagatgaacaaggtgtttatctttcatttgagctattggacttgttaatgtgtggaggttaaatatttgtaagaatatttttgcgttccatgcgccaccgtttcagctgaacgtgggagggttgatccccaattgggaaccagtatcgtagacaggttaatagATAGAGCATGTCTGTATGTCCACCTACCCTTGTCCCGAATGGCATGGATAGAAAACTCCTTGACTTCTGACGGATCCTGGATGCCCATCTCTGTACACAGCTCTTCCACCACCTCTAGAGCCACCTGGGCACACAGAGTCAATCTGTATCATAATGGTAATtcaagggaggaggggaagaggagaaaaGTAAAGGGAAGGAGACTTGACTTACGCTGAAGCTGCGTATTTTACAGATGAACTCCACTCCGCCTGGCAGCTTGATGGGGAACCGACGAGATTGTCTGCCAGCCTGCAGAGAACAGACACACAGCGACAGCTGTACCGTTTATCTTACATAATAACAAGATATCCACACTTATGTGGAATCCCTGCCTTACCAGTATGGCTTCCATCTCTGCGTGAGAGGGGACGTGTCTGCGACCACCGTGGATCAGAGTCCCGAACATGTTCTCCTTACAGTTTTGAGACAGCTCTGAGATAGAGGATAGACACATACATCATTGCATTAGATACAGAAAAGCTCTGGGgtaacagacacagacacatgtttGAAGGGATCTCCTCTGGGGCATCGCCAATGTGTGAGGGGTGCAGGGCTGTACCTTAATAGGGGTGTGTTGGTCTTGGCTGATGTCTCGTAGGTGGCGTGTGACAGTAGGTGTTcagagtgtgcgtgtgcgtaccTTGGTAGAGGTGTgtggggtcttggctgatgttTTGTAGATGACATGTGATGTAGGGGTTCAGAGTGCCAGAGCAGGGGAAGAACCCTGCTACCAGGTTCAACAGACGCCAACCCCGGGtacatctctctctgtataaCGCATGCGCACACAAGTTAGGAATTGACCCTCTGTACACTACTCGCAGGTAAAGGTTCGTACACAATCTGCCAGCTACTCacttgtgtgtgttgtttgtgatCTGTTTGATCACCTGGCAGTAAATCTCATCTCTCAGAAACTCTTTCTCCTTCCCTaactgaacacacaaacacaatgggaCAGACATGACTCCATGTTTCCATTCAAGCAGCTGGTATCCTCAGTGGGAGTGGGAGGTGAGTGATGGTGTTTGCGTGTGAGCTGTGGGTGTGCAACGGGAGAGGCTCACCATCAAGATATGGCTGACACAGTCTCCCTCAGACGTGTGCCTCCCAAGAGGCTGGTCTCCCATGAACTGCATCACACCttcagagagcgaaagagaagtGGGAAAGGGGAATATTGAGATGAAAGAGGTGCAATGCACACCTCAATAGTGTGCGTCACAGGAGGTTGATGGCACCTTAATCGGGGAGAATtcgctctgttccagccattattatgagccgtcctcccctcagcagcctccactggtgtgcgtgtgcgcgtgtgtgcgtgtgtgtgtgtgtgtgtgtggactcacTCAGGAAGGCCTGGACAGCCAGGCCATTGAGCTCAGGATCATTGTACAGGATGAGGGATTCCTGAATGGGAACCTCTGTGTACTGAAGCACCTCTGAGAAGTTTATACCTCCATTAAGCAGACCTTTACCCTCCATTCTGTgatagagagacaaagggagaaagACGAAGGAGGGGGGATTAtgaaagagggagcgagatggagcgaggaagagagagtcCGAGAGAAAGTACataaggagaaagagaggtaagTATATGTCGTTATGGAAGAGTTATTACACTCAGGAAAATATAGGATTGCATACATCATATAACCTTGTTACCCCTCTCACCTGGTGGCAGTGTCTCTGAAGTATTTCATGGCAAACTCTGTCATCCGGAACGTCTGGGCGTCACTCATCTCACTGCCCTGGACCGATACTTGGACGGAAAGAGCTGACCCCAGCATGGAGCTCCCTCGGCTGGGCTGTGCTGAGCCAGTGTGGGGAGTGGACCTGGGAGCTGGGGGTCTGGTGGCAGCGGGCGGCTTGGAGGCTCTCATGCTCTTCCTCCTCTCGTCGAGGCGGTCAAGGTGGACGTGGTGGTAGTCAGGAGGGGCAGACGGCTGAGTGACGTCGATGGGGAAAAGGCCGGAGCGCCCCCCGATGGAACCGAAACACCAAC

Function

NR:

description
unconventional myosin-XV-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1900933 False 2194 lncRNA 0.52 3 9391885 9395929
TU1900934 True 2434 lncRNA 0.49 2 9391885 9394359

Neighbor

gene id symbol gene type direction distance location
trnaa-agc-8 NA coding downstream 62743 9329070 ~ 9329142 (-)
pkd1b LOC106589455 coding downstream 81035 9281357 ~ 9310850 (-)
spata20 spata20 coding downstream 120372 9193289 ~ 9271513 (-)
LOC110498733 cacna1g coding downstream 352564 8840691 ~ 9039321 (-)
LOC110498925 uts2r coding downstream 597294 8719208 ~ 8794591 (-)
nme2a LOC106589447 coding upstream 110445 9506374 ~ 9513698 (-)
LOC110498935 LOC106589231 coding upstream 153009 9548938 ~ 9552737 (-)
LOC110498737 ca10 coding upstream 281971 9677900 ~ 9986739 (-)
LOC110498936 LOC106589191 coding upstream 1213818 10609747 ~ 10668872 (-)
LOC110498937 LOC106589191 coding upstream 1307452 10703381 ~ 10704272 (-)
G1660981 NA non-coding downstream 32284 9358052 ~ 9359601 (-)
G1660967 LOC106589233 non-coding downstream 56956 9331760 ~ 9334929 (-)
G1660898 NA non-coding downstream 194998 9185730 ~ 9196887 (-)
G1660452 NA non-coding downstream 206774 9184824 ~ 9185111 (-)
G1660451 LOC105030512 non-coding downstream 207173 9183905 ~ 9184712 (-)
G1660999 NA non-coding upstream 35852 9431781 ~ 9439407 (-)
G1661056 NA non-coding upstream 78660 9474589 ~ 9474809 (-)
G1661060 NA non-coding upstream 86336 9482265 ~ 9482546 (-)
G1661061 NA non-coding upstream 86714 9482643 ~ 9482873 (-)
G1661094 NA non-coding upstream 139378 9535307 ~ 9535576 (-)
LOC110498913 h3f3b other downstream 1002631 8386968 ~ 8389308 (-)
LOC110498864 LOC106589517 other downstream 2820430 6568700 ~ 6582912 (-)
G1657869 LOC106589521 other downstream 2882305 6509119 ~ 6509580 (-)
G1657868 LOC106589521 other downstream 2883956 6505621 ~ 6507929 (-)
G1657862 NA other downstream 2891677 6499834 ~ 6500208 (-)
G1661023 NA other upstream 3188 9399117 ~ 9400947 (-)
G1661001 LOC106589450 other upstream 26854 9422783 ~ 9460115 (-)
G1662039 NA other upstream 1081034 10476963 ~ 10477185 (-)
LOC110498953 NA other upstream 1725984 11121913 ~ 11158776 (-)
G1663264 NA other upstream 2146687 11542616 ~ 11543091 (-)

Expression


Co-expression Network