G1660999


Basic Information

Item Value
gene id G1660999
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 9431781 ~ 9439407 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1900915
ttaaaaaaaatatatacaaaatatacaTTTGTGAAGCACAACAAATAATCAATCACAGCAAGTCAATATCATAGGGTTCAGCTTCCAGCATTTGTATGAACACAGACAGAGTTCCAGAGCCTTGGTTGCTTCACCCAAATTGGTGTATTCCCATCCCAATCAACCCATAGCCTGTGCCTTCAACACCTCACGAAGtgtcttcagaaaatattcaaacCCCtagacttgttccacattttgtgttacagactgaatttaattGATTAAGTTTTATGTTTTTCATCACTGTCCTACACGCAACTTATAGtgaattatgtttttattttttttccccacacaaattattattattatttttttataaatttgacctttaactagttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagctcagggatttgaacttgcaaccttccgggtactagtccaacgctctaaccactaggccaccctgccgccccaaataaaATATGCCCCTTTATGGCAAgccaaaataagttcaggagtaaacattaggttaagtcacataagttgcatggactcactgtgtgcaataagtgtttaacatgatttttgaatgactactgcACCCCACACATACCGATAATTGTAAAGGTCCCTCAgtggagcagtgaatttcaaaaacacagattcaaccacaaagaccagggagatattCCAATGCCCTCGCAAAGGGCACAGATTGGTAGATGcgcaaaaaaaaaagacattgaatatccctttgaggatggtgaagtttttaattacactttggatggtgtagcaatacacccagtcaccacaaaCATACAGGCGTCCTTTCTAACTCCGTTACGGGACAGGAAGGAAACCACCTAGGTATTTTACCATGAgcacaatggtgactttaaaattgAGTTTAAACGGCTGTAATAGGAAAAAAACTGgcgatggatcaacaacattgtagttactccacagtactaacctaattgGCAGAGTGAAAAGGACGTTttttacagaataaaaatatttcaaaacatgcatcgtttgcaacaaggcactaaagtcatCTAAAACACattgtggcaaagcaattcactttttgtcctgaatacaaagagcTCGTTATGtgtggggcaaatccaacacgtcacattactgagaaccactctccatattttcaagcatagtggtggctgcgtcATCTTATTAGGTAgtcttgtaattgttaaggactgggtcgtttatcaggataaaaaagaaacggagCTAAGTTTAggcaaaatccaagaggaaaacctgattcagtctgcttttccaccagatactgggagatgaattcacctttcagcaggacaataacctaaaacacaaggccaaatctacatgaattgcttattgaaattttacTAGGCAaatcggttaagaacaaattcttatctacaatgacagcctactccggccaaacacaaacgacgctgggccaattgtgcgccgccctatgggacttccaatcacggccggatgtgatacagcctggattcgaaccaggtactatagtgacgcctcttgcactgaaatgcagtgccttggaccgctgcgccactcgggagtcccaagtagacagtgaatgttcctgagtggcagagttacagttttggcTCAAATCTGCATATGGCATGACCTGAAAATggttttctagcaatgatcaacaaccaatttgacagagcttgaagaattttgaaaatattaAAATGGGCTAACGATGCACAatacaggtgtggaaagctcttagagacttacccagaaagactcacagtcaGGGGGTTGAATCTAATCAAGATTTAATAGGGTTtctttttttaaaataataatttctcGTATTTTGTGCAGATCtgtgacaaaaaaacaacaacatttaaatCACACTTTGGAAAAAAGGTTGCGAACTTTCTAAAAGATTGGATAGGTGTGAGCAACATGGATTTTTATCGCCGTGTTGCTTATGCCGATCCAACCCTTTCAGATCTACACATGCCTAGGGGAGCTGGGCCGTAGAAGAGGGTTAAGTAGGTAGGTGTCTAGGTCGGTCAGTGTGGTGAAAAAACGCTAGCGACACCTGCAGTCCCATGCTCCACTGAGTTCACATTACATACTCAAACTGAAACAATATTATCATGACCAAGACTGGGCATCCATAAGGTCTTACTCATGCATATATTTAAAGCAATGAATAACAAATGGCAAATGAAAACAATGCAttgaaatgtactgtatgtgcaacGTGTGGATGCattctactgtagtgtataaaAATCAACATATTCAGTTACTGACTTCAGACATCCGTTTTCCCTCGTAAGCTAGGCTCATTCAACAACAGTAGGATAGACTGGGGGCAGTTGTAACGGGGGTCAATTGTAACACCTTGCATATCTCCAAACTTGCTGTGATGAAACTCACACAGTGCATGCCCATGTAATGGTCTCTCTCCCTGCTTGAAAAGTTACAGCGAAATATCTCTGCACATTTTATGGGCAAATATTGTTCTTTTTTTTAGGGGTGAATGTAGTCCCCCCCCACCCCAATCGGATGTATTTTTCCTTTACGCTCCAATAATTCAAACTAGCATAATTATCATCACTATATACTGGCTGAATATTGACGTGACACTATTGTTGTCTCTTGACAGGCACATGAGGTTGTGTCATTGTTGCTAGGGTGGGGGGCAATTGTAAAGCAGTGTTAAAAATGACTCTGAGCCAAGCTGCCAAAATATGAAAACAAGTGATTTTTACATGCATGATACAAATACTAACTAAATAGCCTTGGGGTCCAGTAGCATACCAAAGAAGTTGTAAACAGTTGTCTAGGAACCATCAGACTATTCAGATGTTTTGAGAGGAACTGAATGGCCATGCTCAAACATACTGTAATCATTGGTTACGTACATATAAATACTCATTTGTTGCAAAATCATTACATACGTCTATGATAATTCATTAACATTCATGTTTTTAAGTTAAGTTAATTTATTTGGTTTATTTTTTAGGTGTTACATTTGACCCCagctacttaaaaaaaaaacacatttcaaacCCTCTCTCTGGCCCTGGTACTTGGAGACAAACTTTGACTTCTTACAGCTGAGATAGGCTGAGGTCGAGGGTTGGTAGCCTGAGTctatagatgggttagctgaTAACGTCACGAAAACAAGGCGCACGCTTCAAATGGGGCAGAAGTCTGTGAGaggttgtgattctggatggccagatagctactaacaatgacaagaaactgccacgTGGGGAGTCGTGACTCTTTTTGGTTAGTTTCATCTAGTTCTTGAtatcatgtcttgttttgaggtgttttgactgatttcatgtcaatgctaatatggctaaaattaGCTCGGTAACTAATCAACAACTGTAACAAGAGCTCATTGTCCAACATTTATTTAGGTTTTCAATAAACATAGTCGacgaaatatagtttacatgttgtcaacaaccTAAAGTCAATCCTGTCTGTTTGGACCCATTGTTGCtaaacaaccaCCACTTCACACCTATGTCCTACGGACCAGGTTCCCAGGGAACAGAGTCAGCTGACCTGGTCAGCCAATCAGTGGCTTAGCCTGGGAGCATCAGAACCCCACACTGCCTCTCAACTCTTTAGTTCTTTCCAGGAGGGCAGGGTGAGAAGGGATTTAAACTGATGTTCTCCACCTCAACTCACATCTGGACCCTTTCCACATGGACAACACTGCCTCCCAACTGGTGTTAGTGAGTCTTTGACATTGAACCACTATACATTATCACTTTCATTAGTTTTCTCCTCTTCTTGTTTGCCATGTATGTGCGCTTGTCCGTTCCTGTCCTCAGAATACCAGCTGACCCAGCCCCAGCCCTGGGTCCATGGCCCTCATCGGCCCATAAGGACAGTCTAGTGTTCTCTTCCCGTTTGCCGTGTGTTTGGTGTATGGAAATAAAGTGTGAATTGTATCCCTATCTCCTACTGGTCATTTACGCCTAACCAGGGTGCTGGGAAAGTTGTACCATAATCTAAACCGGTACCTCTTTCAGAGACCGCCAAATGGTGTGCTTCTTTTTCatggtccttcgagccggataGGTTAAATTGTCCTGGACTATGACCAGTAGTGAAGGGATGCAGTTCATGCTGCACACACACCGGCAAGAAGAGGAGGACCGGGAACTCCGGAGACTCCAGTGAAAAAGGAAGAGGCTCCAGCGTATCACAGATGCTGTCATCAAGAAACTGCGGGAGGTAGATGCGAGGGGTGGCATGGTAACATCAGGACAAACCCAAGGCACTATGTGGGCATAGAGAACCCGCAGCGCTGGTCCTGAGTCCTGCCCGTCCAGCAGCCACTAGCTCCACAACCTCCGCCTGGCTACTGGCAGCACCCAAAAGTCTGCACTTCAAGCAAAGCatttccccggtaggccgtcattgtgaataagattttgttcttaactgacttgcctagttaaataaaggttacattttatttttttaaagccccTGAGCACCGATGGATCGACCAACCGCATCCTGAGCTCAGGACAGGGCAACAGCCTCAAATGGCTTGGGTGCCATGGCCACCGGTCCAGCCACCCCCTCACTCATGTAGAGTAGCCACCGGCACGCCAGCCAGTTCTGCCACCACCTGGACTCCAGCATGTCCGGTGGTCACTAGTGCACCAGGAGGTTCTCCGGCCAGTGCCCTCGCCCAAGACTACCACCAGGACTCCAGCACGTCCAGCGGTCTCCAGTGTCACAAGTGCTCCAGCCAGTGCTCCCAAGCTAGTTACTCGGACAGTCAAACGGTCACCATCGGAACCTGAGCACATCCAGCAGCCAGCTCCGCACCCAACTTGCACACCACAAGCAGCACCTGAGCCAGTGAAGCCATTGCCAGGACTGCAGCCAGTCCAGCAAGCGTCAGAGCTCCAACCTGCAGACAACCAGCCAGACCAGCTACCGGTGCAGCTACCGGTGCCTGAGCCAGCACCCTAGCCAACACTCCAGTTACTGTCACTCCTGGGCAGCCATAACCGGACTCAACTCCGGTGCTGGTCCCTACACTACCTGCTGCCCTTGCAGAACTGCTCGGCCTGGACCTGACGCCCACGACGACTCTCCAGCAAGAGTCCCAGTTGGCGTCCCATCCAGCACCAGAGCCTCCAGCGCCATGTACTCTGGACCTGCAGTCGGCTGACCCTGATCCTGTTCTGGTTCCAGCATCAACTGCAGTCCTCAAGAACTAGCCCTGACCTCGGCACAGCGTCTGGCCCTGTCCTGGACCCACCGGCCGACTACGCTCCAGTCCCCACACCATCGGCTGATCCAACGGCAGCCCTGGATTCCCCATCTGGACCTGATAGGATACAATTAGCGGCTAGCATGCTACACAATATATACAAGAGTTAACAGTTAACTGCCCTGGTATGAATGATTAGGAGTCAGATGTAAGTTTACTATTTATAAAAAATGACTGGCTTAGTTCAAGTGGTCTCTGAgcaaaaaaacaagacaaaaatcgGTTACCAGACCACCCTATCTGGGATACATATTAGATAAGTGTTTTTACATTATATCTTCCTCACACACATCTCTTATCAGATTATGTAACTACTAACTACCCTATGAAATAGTGTACTTAAAAAGTAAGTACCTACactccagtggaggctgctgaggcgaggacggctcataataatggccagaatggtgtaaatggaatcaaacacatggaaaccatatttgataccattccaccaattctgCACAATCCATTACCataagcccgtcctccccaattaaggtgccaccaacctcctgtggtacacTCCAATCAAAGGGAACCTATGAAGGGCACAAGTGTGCGAGCTCCCTGAGTCAAGGTGTTAATCCTAGGCACCATGTTTTTGTGCTCTCTTAGGCCCAGAACAGACTCCTAGTCAACTTAGCATTTGACCTTCATTGTAGCCAACAATCAAAATAGGGAGAGCGGGTGTGGCGCACACATGATAAAATATAtccatttatatatacagtatgactTGGGACGCAAGGTTTTCCTGACCCCGTGAGCCAACCAGGGAACAACTCTGGGTCTCACGATCAGATGACATGGTCagaaaaaactcctggccctgaaGAGGTAATTCACCAGAAGCAGAAAGCACGATGGAAAAGGCCGGTTTGTGCAACATGACAGTTTGTCTGACAGCACATGATACATACATCAGCTATAACAAAAgcatcaataaataaatacaatgtataaatacacaggatagaaagaaataaaaactgaaaagcTGCATGGGCAATGGCAACTCATGACaatctgcttcccaaatggtaccctattctctatagtgctctacttttgaccagaacatTATGGGGCCATGGTCGAAAGTAGTACAAAGGGTGGCATTTCGGACACAGCGAAAGTCATATATCAGGGATAAAAAAGTTCAAATGGATCTACTGATTCGATCACCCAACAcagacaggtagcctggtgggtgAGTCTTTCTGCTTTTAGGCCGGGATTCAACACGAAACGGTGCGTGAGCGCGCTTGACATGGGtcatttccaattgagccgacatCCGCAGCGTTTACCTTAAATGcgatctgcacgaacccagtaaAATTGCCTTTGAAAGCAGCATTGTCTACAAGCGTGATCTGATTGAATCCCGGACGTAGTCAGCTTGTGCGTTGTTGATGTCGAACGCAGAAACATGCACCCAGGCTAGTAAAAAGGCAACTGAATGATATGAAGCACCTTCAGAATACCCTGGAACGCTCTAGAAGGTATTGTAATCGAGAACACCACAGACAAAACCTTGTTAACTACAGTTGAAGACAGTCCCCTCTTTACTACAGTACTCTGGTGGGAAGAATAGGATGGAAGAATGTACACAGGGATCAAACCAGTCTATGATGATTATAAAATAACAAAACCTTCCTACAGTACATGAGTTTCAAAGTGGCATGCTAGCACATTCAAATACAACTGACCTAAACAAGACTAATACAGTTGTACTTTTTCAAAGTAcattatattaatatatattcTTTATTGCATTACAGCAGGAGGATTGCCCTTGGCTTAGCTCGGGAGTCGGAGCATGTGTGTGAAACAAATAAATATTTGTTAGAAAAGAAATggggaaaaaagaaagaaaaaacaaaatatattctCTTACATTCTGGTTTAGAAAATGCCATGTTCATTATCTGGCTACAAGGCTGGGTTCTAGAGAGTAGCCTTGAGATTGCTTGCTGAGAAATGCTTAGTGTGTTTCCCTAGGTTCCCCATATTGACTTGAATCCAGTTTCCTCCAGACATCACCTGATGGTAGGTGTTTTTCTAGTCTGCTATTGGGATACTCTCCTCgggcagtgtttcccctatatgcattttctttttatatacactaccgttcaaaagt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1900915 True 7557 lncRNA 0.44 4 9431781 9439407

Neighbor

gene id symbol gene type direction distance location
trnaa-agc-8 NA coding downstream 102639 9329070 ~ 9329142 (-)
pkd1b LOC106589455 coding downstream 120931 9281357 ~ 9310850 (-)
spata20 spata20 coding downstream 160268 9193289 ~ 9271513 (-)
LOC110498733 cacna1g coding downstream 392460 8840691 ~ 9039321 (-)
LOC110498925 uts2r coding downstream 637190 8719208 ~ 8794591 (-)
nme2a LOC106589447 coding upstream 66967 9506374 ~ 9513698 (-)
LOC110498935 LOC106589231 coding upstream 109531 9548938 ~ 9552737 (-)
LOC110498737 ca10 coding upstream 238493 9677900 ~ 9986739 (-)
LOC110498936 LOC106589191 coding upstream 1170340 10609747 ~ 10668872 (-)
LOC110498937 LOC106589191 coding upstream 1263974 10703381 ~ 10704272 (-)
G1661017 LOC106589452 non-coding downstream 35852 9391885 ~ 9395929 (-)
G1660981 NA non-coding downstream 72180 9358052 ~ 9359601 (-)
G1660967 LOC106589233 non-coding downstream 96852 9331760 ~ 9334929 (-)
G1660898 NA non-coding downstream 234894 9185730 ~ 9196887 (-)
G1660452 NA non-coding downstream 246670 9184824 ~ 9185111 (-)
G1661056 NA non-coding upstream 35182 9474589 ~ 9474809 (-)
G1661060 NA non-coding upstream 42858 9482265 ~ 9482546 (-)
G1661061 NA non-coding upstream 43236 9482643 ~ 9482873 (-)
G1661094 NA non-coding upstream 95900 9535307 ~ 9535576 (-)
G1661111 NA non-coding upstream 121424 9560831 ~ 9567261 (-)
G1661023 NA other downstream 30834 9399117 ~ 9400947 (-)
LOC110498913 h3f3b other downstream 1042527 8386968 ~ 8389308 (-)
LOC110498864 LOC106589517 other downstream 2860326 6568700 ~ 6582912 (-)
G1657869 LOC106589521 other downstream 2922201 6509119 ~ 6509580 (-)
G1657868 LOC106589521 other downstream 2923852 6505621 ~ 6507929 (-)
G1662039 NA other upstream 1037556 10476963 ~ 10477185 (-)
LOC110498953 NA other upstream 1682506 11121913 ~ 11158776 (-)
G1663264 NA other upstream 2103209 11542616 ~ 11543091 (-)
G1664239 NA other upstream 2810743 12250150 ~ 12251106 (-)
G1665402 LOC106589366 other upstream 3961874 13401281 ~ 13407377 (-)

Expression


Co-expression Network