XLOC_000359 (vps8)


Basic Information

Item Value
gene id XLOC_000359
gene name vps8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 30083578 ~ 30310689 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000614
AACAACTAGGATGTAGTCTGTTGCTGTAGTGCATTTTGACTACAGCTGATAAAGGTATAACTTGATGATATTTTATCCGAGAGCTGATCTTTGACAGTACAATGGCTGAGTCTCCAGACTGTCGGAGTCTTGTTTCTGCGTCGTCACAGCTCAATTTAATGGAAATAGAGGCGATTGACGATAAAGAGTTTGACATCCCTCAAGTGGACACACCTCCGACCCTAGAAAGCATCCTTAATGAGccTGAAGATGAGGATGAGCCATTCATTTTAGAGGACACATGTCTTTTGAACACAGAGAACATTGATGCCCACTCGTGTGAGACCTCTTCTTTGGCCAGCTCTGACAGTGGAGACCGAACGCATTTAAAGAGGAGGAGGAAAGCGGTGGAAACTAATGCTACAGTGCATGGATCTGTTCTTAGACGCAATGTGCTGAAGGGCATCTCAGCTCAGATAGTATCTGCTGCGGATAAAGTTGATGCTGGCTTGCCGACGGCGATAACTGTTTCAAGTGTGATTGCAGTAGGAACATCTCATGGTCTGGCCTTAGTGTTTGATCAGAACCAGGCTCTGCGTCTGTGTCTGGGCACTACAGCGACAGGAGCAGAATATGGTGCTGTGTCGGCTCTCAGCATTAATCACGACTGCACACGACTGCTGTGTGGCTTTGCCAAAGGACAAATCACCATGTGGGATTTGGCCAATGGGAAGCTGCTGCGCACCATTACTGATGCCCATCCACCTGGCACTGCCATACTACATGTGAAATTCACTGACCACCCAGCGCTGGCTGTGTGTAATGACAGTGGCGGATCAGTTTTTGAGCTGTCATTCAGGAGGGTGATGGGGATGAGGACATGTGAATCCAGGTGTTTATTCAGTGGTTCCAAAGGTGAGGTGTGCTGTGTTGAGCCTCTACATGCTGGAACTGAACTCAAAGATCATCCCATTACCCAGTACTCCCTGCTGGCCATGGCGTCACTCACCAAGATTCTGCTGATAGGACTGAAGCCTTCACTCAAAGTGTGGATGACGTTTCCTTACGGCAAGACGGATCCTGCAAGCGTACCCTTGTTGGCTTGGCAGTTTGTGGCTGCACAGAAAGCAATCAACCCAGTTCTGGCTTTCTGTAGAGGAGACACCATCCACTTCCTACTGGTTAAAAAAGACGAGTCTGGCACCATCCATGTCATCAAACAAAGGCAGCTTCAACTAAACTGTGACCTAATCAGTCTGAGCTGGATAAACCCCCGGACGCTTGTGTTGATGGACAGCACAGAAAAACTGCGAGTGGTGGACAGACCCAGTCAGGAGGAGCTGGAAACCGTGGACATGGCTGAGCTTCAGCTGGTATACAATAGCAGCCATTTCAAATCCCTCGCCACTGGTGGAAATGTCAGCCAAGCACTGGCTCTAGTTGGAGAAAAGACATGTTACCAGTCTGTTTGCAGCTATGCGGGCCAGATTATGTATCTTGGAACAAAGTCTGTGCACATCATGACTCTGAGGAACTGGCGTGAGCGTGTGGACTACCTGTTGAAGCAGGAGAAGTTCATGGAGGCTCTGTCTCTTGCCTGGTCCTTTCATGAGGGCACTGCCAAAGCTGTATTAGGTTTGTTTGCAGACCCTGCTAAGAGAAAAGGTGTGGTTGCAGACAAGATGGTGGAAATTTTGTTACAGTATGTGGAGCGCTCTCTGAAAAAGTGTCCAGAGCATGGGAAAATCCAGGTGATGGAGCAGCACTTTCAGGATGTGGTTCCTGTCATGGTGGATTATTGTCTTCTTCTACAGAGGACGGACCTGCTCTTTAACCAGATCTACCCTCGGCTGGTGGAGAACTCTGTAGCTCGGGGTGTTTTTCTGGAGAGTTTGGAGCCCTACATTCTGAGCGAGCGGATTGGCTGTCTAACTGCTCCTGTCATGAGAGACCTGCTCAGTTATTTCCAGGAGAACGGCATGATGGATAGTGTGGAAGGATGCCTAGTCCACATGGACATAACCAACTTGGACATACAACAGGTGGTGCAGATGTGCTGGGATAACCAGCTCTATGATGCCATGATTTACGTCTTCAACAGTGGCATGAATGATTACATCAGCCCGATGGAGAAACTCTTTCAGGCGATTGGTCCTCCTCTGCAGGAAGGAAAGCCTCTCACAGATGAGCATGTTGTAATGGGGAATAAACTGCTGGTGTACATCAGCTGTTGTTTGGCAGGACGTGCCTATCCACTAGGTGACATTCCTGAAGATCTGGTCCCTCAGGTGAAAAACCAGGTGTTTGAGTTTCTCATTCGTCTGCACTCTGTGGAGGCTGCACAGGAAGAGGAAGTGTATCCCTACATCCGAACACTCCTGCACTTTGACACTCGAGAGTTCCTCAACGTTCTGGCACTGACATTCGAGGACTTCAAGAATGACAAACAGGCTCTGGAATATCAGCAAAGGATTGTGGACATTTTACTAAAGGTTATGGTGGACAATTCTGACTTCACCCCATCTCAGGTCGGCTGTCTTTTTACCTTCTTGGCGCGACAACTTGCCAAACCTGATAATACCCTCTTTGTTAACCGGAAGCTGTTTGACCAGGTCCTGGAGTTTCTATGTAGTCCAGATGATGACTCTAGGCATACTGAAAGGCAGCAGGTCCTGCTGGAGCTGCTGCAGGTTGGCGGTGTGGTCCAGTTTGATGAAGGACGTCTGCTTTACCTTGCTGAGAAGGCAGAGTTTTATCAAATATGCGAGTTTATGTATGAAAAAAAGCACCTTTATGACAAAATTGTGGACTGCTACCTGAAAGACCCTTTGAGAAAGGAGGAGCTCTTCAACTACATCCATAATATCCTGTCCATGCCTGGCTACAGCGCAGAGGAGAAACATTCTGTGTGGGTCAAAGCCCTTCAGCACTTCAAGGATCTGGTCCGAATCAATGCGGCTAAGACAGCAGAGCTGGTGGCGGTGCACTTCGCAGACGAGGTGCACTCTATCATCACATCTCTACAGGACAATTATTTGGTGTTCCAGTTTCTGAAGTGCCTTCTGGACCCCAGCTCCAGAGAGGGTCTGAATTCTCAAACAGTCCTGAAATTGGGCCCTGATCTTCATGAGCTCTTAGTGGATCTTTTGTGCCAGTTCAGTCCTCAGCAGGTCATTGTCTTTCTTAAGACGTCTCAGGACTACAGACTGGAGGAGACCATCCAGATCACAGAGAAACACAAGCTGCATGAGGCCACAGCCTACCTGCTGGAGAGGAAAGGAGATGTACAGGGAGCTTTTCAAGTCCTGCTGCAGACCCTGAAGGGCAAACTCCACAAACTTGCCATGGAAAGCTCTGACTCAGACAAGCCTGACGGTGAGGAGGAGGAGACAGCTGATGAAGTGCAGAGTCTGTTACAAAGAGTGGAGGAAGCTCTGCATGACATCATTGCTTTGTGTCAGAGGAGCTCAAGCGGCCTCAACCAGCAGCAGAGAgagGCTTTGTGGTTTCCTCTCCTGGAGGCAATGATGTCACCACAGAAACTACTCAAAGGAGCAGATACCATACACACATCAGAAGCACTAAAAGAGCTTACTATGAAAGTGTTAAACAGCATGTCCAGTTTTATTGCTCCACCTGCCATCATTCAGCGCATCCTACAGGATCCTGTATATGGGAAAGGAAAACTGGCTGAGATCCAGGGGCTCATTTTAGGAATGCTGGAGACTTTCAACTATGAACAGACGTTGTTGGAGACCACCACAAATCTGTTGAACTCAGATCTTCACTGGTCTCTCTCACACTTGCGCAAGGCAGTCTGTAAAGGTCTTCATCCAAGACAGGACCACTGCAACATCTGCTTACAGCAGTACAAAAGACGACAGGAGAGTGAGGAGGAAATCGTTATCTTCAGCTGTGGACACCTGTACCATTGCCAGTGTCTGCAGCGTAAAGAGACAGGTGTTTTGAGTGAGAGGCAGTACCCATGGAGCTGCTACAAATGCACATCCAATCAGGGCTCACGGCCAGCGGACAGAGCCAGCGCTGAAAGCTCACGATCACGCTCTGCTTCTCTGGCACAGAACAAAGTGACATCTGCTCATCGTGGGATTACGGCAGAGGCTCATGGGAGAAAGATGATGACTGAAGCCACTTTGGATGCCCAGCAGACACAGGCCTGGGATCAGTTCCGCACTATTTACAGAGGACCATCTCGGCTTGCTGTTCTGACAGAACTCACCCATTCGCATGGCACTGAGAGGGCCGGTTTGTCAAACCCTGCCCATCCAGGAACAGGAAGCATTTACCACAGCGAGAACTTTCAGTTAAAGCTCACTCCTCCGCCACTGGTGGAGGAATAGATGACTCCGTCCACTGTTACCAATCTTAATAAAGCACTACCATGTCTGTACAGAAATAA
>TCONS_00000613
AACAACTAGGATGTAGTCTGTTGCTGTAGTGCATTTTGACTACAGCTGATAAAGGTATAACTTGATGATATTTTATCCGAGAGCTGATCTTTGACAGTACAATGGCTGAGTCTCCAGACTGTCGGAGTCTTGTTTCTGCGTCGTCACAGCTCAATTTAATGGAAATAGAGGCGATTGACGATAAAGAGTTTGACATCCCTCAAGTGGACACACCTCCGACCCTAGAAAGCATCCTTAATGAGccTGAAGATGAGGATGAGCCATTCATTTTAGAGGACACATGTCTTTTGAACACAGAGAACATTGATGCCCACTCGTGTGAGACCTCTTCTTTGGCCAGCTCTGACAGTGGAGACCGAACGCATTTAAAGAGGAGGAGGAAAGCGGTGGAAACTAATGCTACAGTGCATGGATCTGTTCTTAGACGCAATGTGCTGAAGGGCATCTCAGCTCAGATAGTATCTGCTGCGGATAAAGTTGATGCTGGCTTGCCGACGGCGATAACTGTTTCAAGTGTGATTGCAGTAGGAACATCTCATGGTCTGGCCTTAGTGTTTGATCAGAACCAGGCTCTGCGTCTGTGTCTGGGCACTACAGCGACAGGAGCAGAATATGGTGCTGTGTCGGCTCTCAGCATTAATCACGACTGCACACGACTGCTGTGTGGCTTTGCCAAAGGACAAATCACCATGTGGGATTTGGCCAATGGGAAGCTGCTGCGCACCATTACTGATGCCCATCCACCTGCCATCATTCAGCGCATCCTACAGGATCCTGTATATGGGAAAGGAAAACTGGCTGAGATCCAGGGGCTCATTTTAGGAATGCTGGAGACTTTCAACTATGAACAGACGTTGTTGGAGACCACCACAAATCTGTTGAACTCAGATCTTCACTGGTCTCTCTCACACTTGCGCAAGGCAGTCTGTAAAGGTCTTCATCCAAGACAGGACCACTGCAACATCTGCTTACAGCAGTACAAAAGACGACAGGAGAGTGAGGAGGAAATCGTTATCTTCAGCTGTGGACACCTGTACCATTGCCAGTGTCTGCAGCGTAAAGAGACAGGTGTTTTGAGTGAGAGGCAGTACCCATGGAGCTGCTACAAATGCACATCCAATCAGGGCTCACGGCCAGCGGACAGAGCCAGCGCTGAAAGCTCACGATCACGCTCTGCTTCTCTGGCACAGAACAAAGTGACATCTGCTCATCGTGGGATTACGGCAGAGGCTCATGGGAGAAAGATGATGACTGAAGCCACTTTGGATGCCCAGCAGACACAGGCCTGGGATCAGTTCCGCACTATTTACAGAGGACCATCTCGGCTTGCTGTTCTGACAGAACTCACCCATTCGCATGGCACTGAGAGGGCCGGTTTGTCAAACCCTGCCCATCCAGGAACAGGAAGCATTTACCACAGCGAGAACTTTCAGTTAAAGCTCACTCCTCCGCCACTGGTGGAGGAATAGATGACTCCGTCCACTGTTACCAATCTTAATAAAGCACTACCATGTCTGTACAGAAATAA
>TCONS_00000615
AGACGGATCCTGCAAGCGTACCCTTGTTGGCTTGGCAGTTTGTGGCTGCACAGAAAGCAATCAACCCAGTTCTGGCTTTCTGTAGAGGAGACACCATCCACTTCCTACTGGTTAAAAAAGACGAGTCTGGCACCATCCATGTCATCAAACAAAGGCAGCTTCAACTAAACTGTGACCTAATCAGTCTGAGCTGGATAAACCCCCGGACGCTTGTGTTGATGGACAGCACAGAAAAACTGCGAGTGGTGGACAGACCCAGTCAGGAGGAGCTGGAAACCGTGGACATGGCTGAGCTTCAGCTGGTATACAATAGCAGCCATTTCAAATCCCTCGCCACTGGTGGAAATGTCAGCCAAGCACTGGCTCTAGTTGGAGAAAAGACATGTTACCAGTCTGTTTGCAGCTATGCGGGCCAGATTATGTATCTTGGAACAAAGTGACATCTGCTCATCGTGGGATTACGGCAGAGGCTCATGGGAGAAAGCTTGCTGTTCTGACAGAACTCACCCATTCGCATGGCACTGAGAGGGCCGGTTTGTCAAACCCTGCCCATCCAGGAACAGGAAGCATTTACCACAGCGAGAACTTTCAGTTAAAGCTCACTCCTCCGCCACTGGTGGAGGAATAGATGACTCCGTCCACTGTTACCAATCTTAATAAAGCACTACCATGTCTGTACAGAAATAA
>TCONS_00000616
GTTAAAAAAGACGAGTCTGGCACCATCCATGTCATCAAACAAAGGCAGCTTCAACTAAACTGTGACCTAATCAGTCTGAGCTGGATAAACCCCCGGACGCTTGTGTTGATGGACAGCACAGAAAAACTGCGAGTGGTGGACAGACCCAGTCAGGAGGAGCTGGAAACCGTGGACATGGCTGAGCTTCAGCTGGTATACAATAGCAGCCATTTCAAATCCCTCGCCACTGGTGGAAATGTCAGCCAAGCACTGGCTCTAGTTGGAGAAAAGACATGTTACCAGTCTGTTTGCAGCTATGCGGGCCAGATTATGTATCTTGGAACAAAGTCTGTGCACATCATGACTCTGAGGAACTGGCGTGAGCGTGTGGACTACCTGTTGAAGCAGGAGAAGTTCATGGAGGCTCTGTCTCTTGCCTGGTCCTTTCATGAGGGCACTGCCAAAGCTGTATTAGGTTTGTTTGCAGACCCTGCTAAGAGAAAAGGTGTGGTTGCAGACAAGATGGTGGAAATTTTGTTACAGTATGTGGAGCGCTCTCTGAAAAAGTGTCCAGAGCATGGGAAAATCCAGGTGATGGAGCAGCACTTTCAGGATGTGGTTCCTGTCATGGTGGATTATTGTCTTCTTCTACAGAGGACGTTTCCATGGCTGCAGGAAGATGTCAGGGTTCTTGTCAGAGCAACTGAGCTTGTCACGATTGCCAATTGAGATGTTCCCTGTTTGGGCATCTAAAATGCcttaaaagctttttttcttttttcttttcttttgtttgtttgtctgtgctatctattctattctattctattctattctattctattctattc

Function

symbol description
vps8 Predicted to enable metal ion binding activity. Predicted to be involved in endosomal vesicle fusion and protein targeting to vacuole. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be part of HOPS complex. Predicted to be active in late endosome. Orthologous to human VPS8 (VPS8 subunit of CORVET complex).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006623 protein targeting to vacuole biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0034058 endosomal vesicle fusion biological_process
GO:0005770 late endosome cellular_component
GO:0005575 cellular_component cellular_component
GO:0030897 HOPS complex cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04138 Autophagy - yeast
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-060503-348 Predicted to enable metal ion binding activity. Predicted to be involved in endosomal vesicle fusion and protein targeting to vacuole. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be part of HOPS complex. Predicted to be active in late endosome. Orthologous to human VPS8 (VPS8 subunit of CORVET complex).

Ensembl:

ensembl_id ENSDARG00000060477

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000614 False 4399 mRNA 0.49 45 30083578 30310689
TCONS_00000613 False 1528 mRNA 0.49 15 30083578 30310689
TCONS_00000615 False 687 mRNA 0.49 6 30100257 30310689
TCONS_00000616 True 830 mRNA 0.46 9 30103297 30156998

Neighbor

gene id symbol gene type direction distance location
XLOC_000358 NA coding upstream 4049 30074635 ~ 30079529 (+)
XLOC_000357 pcca coding upstream 129832 29862074 ~ 29953746 (+)
XLOC_000356 zic2b coding upstream 222683 29831759 ~ 29860895 (+)
XLOC_000355 tm9sf2 coding upstream 259203 29798140 ~ 29824375 (+)
XLOC_000354 zc3h13 coding upstream 285671 29766725 ~ 29797907 (+)
XLOC_000362 tmem41ab coding downstream 111454 30422143 ~ 30438036 (+)
XLOC_000363 gpr183b coding downstream 241088 30551777 ~ 30554973 (+)
XLOC_000364 bora coding downstream 412691 30723380 ~ 30735478 (+)
XLOC_000365 BX548015.2 coding downstream 543280 30853969 ~ 30859524 (+)
XLOC_000366 metap1d coding downstream 635542 30946231 ~ 30974165 (+)
XLOC_000350 CR774189.1 non-coding upstream 575105 29507647 ~ 29508473 (+)
XLOC_000349 NA non-coding upstream 582544 29500308 ~ 29501034 (+)
XLOC_000348 CT573186.2 non-coding upstream 630845 29451465 ~ 29452733 (+)
XLOC_000347 CT573186.1 non-coding upstream 637859 29444452 ~ 29445719 (+)
XLOC_000369 NA non-coding downstream 830430 31141119 ~ 31144527 (+)
XLOC_000370 NA non-coding downstream 1043896 31354585 ~ 31359319 (+)
XLOC_000371 CT573247.1 non-coding downstream 1208550 31519239 ~ 31520972 (+)
XLOC_000380 NA non-coding downstream 1699573 32010262 ~ 32011794 (+)

Expression


Co-expression Network