G1662362


Basic Information

Item Value
gene id G1662362
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 10758977 ~ 10765026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1902314
tagctcggtttcaagggtgtttattaaataataaatcaaaaaAGAAAAGAACAGGTCTCCCTCATGAGACCCTCTCCGGGATACCGTCTCCTGGGCTCCGAGTCATCCTGTCGGGCACACAAACTCAACTTCCTCGGGTAACCGAATCCAACCACATGGAAGTCACCTCACTTCCCCTAGTCCTCTCCatgtgtgctgcccttctggcagctttatgggcctcgcacagctggtgagcaatccgcccttgattactcaccagctCCCAATCAGACCCAATTAGTCCTGTCCGGAgagcccgtcgagacctggcacgtccagcagatggagcccCCGCCTCGTGATGTATACTCCATCTGTTaccaggcctcgacgagtctcccctggtggctgacctgctgtacgccacagtatgtatgtatgtatgtgtgtgtgtgtgtgtgagagagagtgtgtgtgtctgtatctgtgtacattaacagggttggggagtaaccgACCGATGTTTCCAGCAAattattgtaatcagattacagatactttagaaaaactagatgattacttgtTGGATTACTTTTAAAATAAAAAGACATtctgacacctttctgttttctcagcGATATTCTATTCAAGCATTGAAATGTTCTACTTTCGgattgttccacctgagcgagtctgacaaGTCAgcgaccactatgatgacacacgtCTTCTAACGCTTCTGAGGTGGAAAGTATTCCCAAAATAACtacgtaatcagattacattactgagtttgagTAATCCAAATCCTACATTACTGATTTTGGACAGGTAAcaagtaactgtaacggattataCTTTGGAAATGTCagcaataatgtgtgtgtgtgcgcatgcacgttaatgtgtgtgtgtgtgtgcgcatgctcgttaatgtgtgtgtgtgtgtgtgtgtgcattacccGGCCCCATCATAAGGTGTTAGACTTTCCCAGGGACAGATGATCTCCTTCACCTGCCCTCCCCCTCTCAATGCCCCCATCTCTCCACCTCATCCTCAGAGTCAACGGGGGTAGATACGACACTCTGGAGGGATGTCCACCTTGATCTGGAAAAAAACTGAAGGAaagtggagaggaaagagggatgagGGACTGAAGGGATGAGGATCTATAAAGGTGTGTGGGAGCTTACTCTTCTGTGACTCACTTGGCAATGCGCCTGGGCTGGGCTGCTCCATGCTGATAGGCTGAACGCGGCTGCTTGTCCCGAAGAGGGCAGGACATTTTGGCGTAATGCTGGGGAATACTGTGGAGGGAGTACAGCCCCCTCTCAACAGACGGCCCAATGAGAGAGCCATACGTGAACGAGAAGAGACAGCAGTCCCCCGGCTCTCAATGTcgacctctcccccctccaccccacctcCCCCCGTTCCCTCCCACCTACGTTCTGAGGCGGGGGTGCTATCTATGGTTACGCTGATGGGTGAAGAGCAGGCGGGGGTGttggggaggcagagagggaaagggggtgaGGTGGAAGAAGAAGGGGGGCCAGAGTAGACCGCCAGGTGGGGTATGGGTGCCGTGAAGTGACACAGAtgtaggggttaaaggtcagagtTCAGACTTAGGGTCAAGGGGGAAAGATCACTGAGAGGTCATACTAATACACCACACACTGAACACTGGTATAAATGAAGGCAGCATGGACTGGTCTGGCCCTCGGACAGAAAATACTGTGAGTTATCTGTTATGGCATTATGGActaattgacagagatgggcacAGTGACTGGATGACACAGTGAAGatgagatgacagacagacatgtgcTGGACATAGACTCTTTATTGGATGGATGGTGCAGAAATGTAAGTTACAATAATGACATACAACATCCAGTATGTGTCATTCCACAAATAGGGCACCTTTAGGGTAGTGTAACTGTTTCCCCATCTCAAGAGGTCAAATGAAGAAAAATGACTATAAAAGTGAAAATTGACAAGGTTGACCGTGACAGGGTTGtcgatttcatcttaaatcatccATAGCTCCCCTTGTGACAGTgtgtaactgaaagtaatcagaagTTTGTTGTGGGGAGGAGCAATTAAATACAAGCTTAAAGGTCCTATGCAGCCATTTTTAACTCATTATCAAATCACTCTTATTATGGTGgtgatttgacaaaattacaatcatggtcttgaattggactcgCCGCCCATCCAGTCTTGGTCTTGAATCGTTCTCGCTTTAAGTGGTCTCGAACACAACACTgctatatttacaaaagtatggACAGctcttcaaatttgtggattcggctatttcagccacagccgttggtgacaggtgtacaaaaccgagcacacagccatgcaatctccatagacaaactttggcagtagaatggccttactgaagagctcagtgactttcaaagtggcaccgtcataggatgccacctttccaacaagtcagttcgtcaaatttctgccctgctagagctgcccaggtcaactgtaagtactgttattgtgacgtggaaacatctaggagcaacaacggctaagccgcaaagtggtaggtcaaacaagctcacagaacgggactgccgagtgctgaggTACGTGGCGCGTAAAAATAATcactcactatcgagttccaaactgcctctggaagcaacgtcagcaactgtcagcagccgcacacaagcctaagatcaccatgcgcaatgccaagcgtcggctggagtggagtaaagctccccgccattggactctggagcagtggaaacaggttctctggagtgatgaatcacgcttcaccatctggtagtccgacgaactaatttgggtttggcggatgccgggAGAACACTATCTGCgccaatgcatagtgcaaactgtacagtttggtggatgaggaataatggtctggggctgtttttcatggttcaggctaggccccatAGTTGCAGTGAAGATACAtcgtaatgctacagcatacaatgacattctagatgattctgtgcttccaactttgtggcaacagtttggggaaggccctttcctgtttcagcatgacaatgccccagtgcacaaagttAGGTCCaagcagaaatggtttgttgagattggtgtggaagaacttgactggcctgcacagagccctgacctcaaccccatcgaacacctttgggatgaattggaacgcaaaCTGCGATTCAGGCcactttaggtcatgTCGTGTAAGTCAGAACGTAGATGTATGTGATCCAACTGTTAAATGGAATGTTTTATCAAAATGTACACACATAATGCATGAGGGACATAAAAGGCACTCTATTGGTGGAACGACACAGATGTGTCCCTATAGGTAGAACATGCTGATGACAGGTGAGAGAAAAGAGATACAGGTGAGACAGGTGATACTGCTCAGTGAGTGAGGCATACCATCAAGACTAAAACACTTAATAACATGAAACATTCAATGGTTTTAAACCCTTGTGTCTGTGGTAGTATTGCGTTCTAATGACAGTCAGACTGATAGACATAACTGCTCTTCCAGCTGTTTTGTCTGATGTATGTATGCTACACTGGCCATGGCAGCATACAGTTGATAGAAATTCAAAATAGTACATTTTATTTCAAATGCTCACTATTTGTCAACTTTGCTGTACTCCAAACTATATGTAAAAGGTAGCAACTACATTGCTTAGCTTTCAGCTGGTGTGTATTctgtgtattctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagtggttGCTTGTGTTTATGCTTATAGAAGTGTGTGTATTCATGTCTATGCATGTGAGTGTGTCTATGGTCTATTTCTTGGACGGGGGCACCTCCTTGCCCTTGTTGCTGAGTTTGCTCATGACCTGTGTGATGTCCACAGGGCCACTGGTGGCCATCCTggctctctcctcctgctccagcTGGCGGACGATGATGGGACTGATGCTGGGTCGACGCTTCCTCGCATTGGCCTCCAACTGGGGCACACTGGaaaagggatgggggagggagagagttgaggagggtgagagagcgtTATTCATGTCCTTACATTTACACACTAATTATctcttagagagagaggggaaagaggtgtTGAGGGAGATACCGTAAAACTTTAGTTAATAGCCTGTGAGTTTATTTGTAACACGTGCCTCGAGGCAGGCTTCAATTTGAGCCAGGCATCTATTTCCTTAATGCACATAGTTTTTGCTCATTTGCATATTTAATTGTTTAATTTCAGCATTTCAATCCATTTCTTCATTTCCTGCACTAATGTATTATCGTTTACACACTGTGTCACATTTCTTTTGTCTTAAGTATgcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1902314 True 4427 lncRNA 0.47 2 10758977 10765026

Neighbor

gene id symbol gene type direction distance location
LOC110499584 NA coding upstream 717614 10038565 ~ 10041363 (+)
LOC110498736 LOC106589448 coding upstream 1256189 9483623 ~ 9502788 (+)
LOC110499583 NA coding upstream 1276678 9476862 ~ 9482299 (+)
LOC110498932 LOC106589450 coding upstream 1290638 9440645 ~ 9468339 (+)
LOC100305179 gna13 coding downstream 15372 10780398 ~ 10782116 (+)
LOC110499585 NA coding downstream 37701 10802684 ~ 10805251 (+)
LOC110498938 LOC106589439 coding downstream 61738 10826764 ~ 10828429 (+)
LOC110498939 LOC106589440 coding downstream 64192 10829218 ~ 10837113 (+)
LOC110498940 LOC106589438 coding downstream 85744 10850770 ~ 10866995 (+)
G1662359 NA non-coding upstream 10633 10732103 ~ 10748344 (+)
G1662358 NA non-coding upstream 28155 10730565 ~ 10730822 (+)
G1662355 NA non-coding upstream 31876 10722746 ~ 10727101 (+)
G1662249 NA non-coding upstream 40070 10718695 ~ 10718907 (+)
G1662233 NA non-coding upstream 59992 10698766 ~ 10698985 (+)
G1662363 rgs9 non-coding downstream 2408 10767434 ~ 10768871 (+)
G1662385 NA non-coding downstream 117546 10882572 ~ 10884264 (+)
G1662371 NA non-coding downstream 225425 10990451 ~ 10994307 (+)
G1662391 NA non-coding downstream 303862 11068888 ~ 11069323 (+)
G1662383 NA non-coding downstream 304478 11069504 ~ 11070255 (+)
G1662037 NA other upstream 282288 10476167 ~ 10476689 (+)
G1661477 NA other upstream 706888 10051622 ~ 10052089 (+)
LOC110498922 cssa28h17orf62 other upstream 2231457 8524125 ~ 8527761 (+)
unk LOC106589472 other upstream 2363501 8392044 ~ 8401533 (+)
G1658572 NA other upstream 3053826 7704506 ~ 7705151 (+)
G1662536 LOC106589414 other downstream 539784 11304810 ~ 11306183 (+)
LOC110498741 LOC106589412 other downstream 607841 11372725 ~ 11404820 (+)
LOC110498970 cript other downstream 784770 11549728 ~ 11553514 (+)

Expression


Co-expression Network