G1662363 (rgs9)


Basic Information

Item Value
gene id G1662363
gene name rgs9
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 10767434 ~ 10768871 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1902315
TTTCCCAATGTTGCCGTAACGCTGTAGCAACGTACCGCTGAACTCCTTCTTGAGGAAGAGTCTGAAGTCATCTCTGCCTCGAGGGTCAGAGAGCAGCTCCCCAAAACTGAAGGTCCACCTCTCCACACGCATCTTGGTAGGAATtcccacaTTTGCCATGTTGAGAAACCAGTAGGTGACATCATCAGTTACCCAGGGGTTGCtagggagacagggggctaggaaaGGGTCGTGCTTATTATAGGTGACAGAGTACTTCACAAGAGCTCCGATAGACACAGATGACTTGACCCTCGGCCTCATGATGGACTGCTGCGTAAAAATCATAATTCTTCTGAAGAAGTCTGAAGTTTGTTTCTCCTCTGTGTTGGGGTCTACCATGCGTTCAAGTCCGTAGTCCATTGCACTGACGGTCCctggctacagacagacagacaaaacattaagtaatGTGCACGGTATGATTCAATATTTTCATGTTTTGGTTTGTGATTGATATCAGACAGAGGAATAAGCTAGGCCGCCAACCCCAC

Function

symbol description
rgs9 Predicted to enable GTPase activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within dark adaptation and light adaption. Predicted to be located in photoreceptor inner segment and photoreceptor outer segment. Predicted to be active in glutamatergic synapse and postsynaptic density membrane. Implicated in bradyopsia.

NR:

description
regulator of G-protein signaling 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1902315 True 533 lncRNA 0.48 5 10767434 10768871

Neighbor

gene id symbol gene type direction distance location
LOC110499584 NA coding upstream 726071 10038565 ~ 10041363 (+)
LOC110498736 LOC106589448 coding upstream 1264646 9483623 ~ 9502788 (+)
LOC110499583 NA coding upstream 1285135 9476862 ~ 9482299 (+)
LOC110498932 LOC106589450 coding upstream 1299095 9440645 ~ 9468339 (+)
LOC100305179 gna13 coding downstream 11527 10780398 ~ 10782116 (+)
LOC110499585 NA coding downstream 33856 10802684 ~ 10805251 (+)
LOC110498938 LOC106589439 coding downstream 57893 10826764 ~ 10828429 (+)
LOC110498939 LOC106589440 coding downstream 60347 10829218 ~ 10837113 (+)
LOC110498940 LOC106589438 coding downstream 81899 10850770 ~ 10866995 (+)
G1662362 NA non-coding upstream 2408 10758977 ~ 10765026 (+)
G1662359 NA non-coding upstream 19090 10732103 ~ 10748344 (+)
G1662358 NA non-coding upstream 36612 10730565 ~ 10730822 (+)
G1662355 NA non-coding upstream 40333 10722746 ~ 10727101 (+)
G1662249 NA non-coding upstream 48527 10718695 ~ 10718907 (+)
G1662385 NA non-coding downstream 113701 10882572 ~ 10884264 (+)
G1662371 NA non-coding downstream 221580 10990451 ~ 10994307 (+)
G1662391 NA non-coding downstream 300017 11068888 ~ 11069323 (+)
G1662383 NA non-coding downstream 300633 11069504 ~ 11070255 (+)
G1662518 NA non-coding downstream 301931 11070802 ~ 11113378 (+)
G1662037 NA other upstream 290745 10476167 ~ 10476689 (+)
G1661477 NA other upstream 715345 10051622 ~ 10052089 (+)
LOC110498922 cssa28h17orf62 other upstream 2239914 8524125 ~ 8527761 (+)
unk LOC106589472 other upstream 2371958 8392044 ~ 8401533 (+)
G1658572 NA other upstream 3062283 7704506 ~ 7705151 (+)
G1662536 LOC106589414 other downstream 535939 11304810 ~ 11306183 (+)
LOC110498741 LOC106589412 other downstream 603996 11372725 ~ 11404820 (+)
LOC110498970 cript other downstream 780925 11549728 ~ 11553514 (+)

Expression


Co-expression Network