G1662385


Basic Information

Item Value
gene id G1662385
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 10882572 ~ 10884264 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1902344
TACTGTAATGCAGTGCAGGCAGGCAGTAacacatattgacattaagggcTGTTTTTTCTGGGATCctggacctacagttgaagtcggaagtttacatacactcaggttggagtcattaaaactcgctttttcaaccactccacaaatttcttgttaacaaactatagtttcggtAAATTGGCTAggacttctactttgtgcatgacacaagtcatttcacttataattcactgtatcacaattccagtgggtcagaagtttacatgcactaagttgactgtgcctttaaacagtttggaaaattccagaaaatgatgtcatggctttagaagcttctgataggctaatttacataatttgagtcaattggaggtgtacctgtagatgtatttcaaggcttaccttcaaactcagttcctcttttcttgacattatgggaaaatcaaaagaaatcagccaagacctcagaaaacaaattgtagacctccacaagtctggttcatcctcaaatgcctgaaggtaccacgttcatctgtacaaacaatagtacacaagtataaacaccatgggaccacgcagctgtcatactgctcaagaaggagacgcgtttctgtctcctagagatgaatataCTTTGGTACAAaatgtgaaaatcaatcccagaacaacagcaaaggcccttgtgaagatgctggaggaaacgggtacaaaagtatctatatccacagtaaaacgagtcctatatcgacataacctgaaaggtcgctcagcaaggaagaagtccctgctccaaaaccgccataaaaaagagtgtactttttgttatttttcctctggtctgattcaacaaaaaaaacaactgtttggccataatctcaagacatcattcaggaagttaaagcttggttgcaaataggtcttccaaatggacaatgaccccaagcagacttcaaacgttgtggcaaaatggcttaaggataccaaagtcaaggttttggagtggccatcacaaagccctgaactcaatcctatagaatatttgtgggcagaactgaaaaagcgtgtgtgagcaaggaggccttcaaacctgactcaattacaccagctctgccaggaggaatgggctaaaattcacccaacttattttggaagtttgtggaaggctacccgaaacgtttgacccaagtttaacaatttaaaggcaatgctaccaaatactaatcgagtgtatttaaacttcttacccactgggaatgtgatgaaagaaatcaaatctgaaataaaacattctctctactaatattctg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1902344 True 1307 lncRNA 0.40 2 10882572 10884264

Neighbor

gene id symbol gene type direction distance location
LOC110498943 LOC106589437 coding upstream 8279 10871100 ~ 10874293 (+)
LOC110498940 LOC106589438 coding upstream 15577 10850770 ~ 10866995 (+)
LOC110498939 LOC106589440 coding upstream 45459 10829218 ~ 10837113 (+)
LOC110498938 LOC106589439 coding upstream 54143 10826764 ~ 10828429 (+)
LOC110499585 NA coding upstream 78899 10802684 ~ 10805251 (+)
syt15 LOC106589230 coding downstream 7549 10891813 ~ 10895363 (+)
LOC110498948 LOC106589430 coding downstream 64568 10948832 ~ 10987833 (+)
gdh03 gdh03 coding downstream 202858 11087122 ~ 11231541 (+)
LOC118942035 NA coding downstream 321159 11205423 ~ 11207593 (+)
LOC118941993 LOC106589416 coding downstream 361936 11246200 ~ 11247516 (+)
G1662363 rgs9 non-coding upstream 113701 10767434 ~ 10768871 (+)
G1662362 NA non-coding upstream 117546 10758977 ~ 10765026 (+)
G1662359 NA non-coding upstream 134228 10732103 ~ 10748344 (+)
G1662358 NA non-coding upstream 151750 10730565 ~ 10730822 (+)
G1662355 NA non-coding upstream 155471 10722746 ~ 10727101 (+)
G1662371 NA non-coding downstream 106187 10990451 ~ 10994307 (+)
G1662391 NA non-coding downstream 184624 11068888 ~ 11069323 (+)
G1662383 NA non-coding downstream 185240 11069504 ~ 11070255 (+)
G1662518 NA non-coding downstream 186538 11070802 ~ 11113378 (+)
G1662519 NA non-coding downstream 186911 11071175 ~ 11071533 (+)
G1662037 NA other upstream 405883 10476167 ~ 10476689 (+)
G1661477 NA other upstream 830483 10051622 ~ 10052089 (+)
LOC110498922 cssa28h17orf62 other upstream 2355052 8524125 ~ 8527761 (+)
G1662536 LOC106589414 other downstream 420546 11304810 ~ 11306183 (+)
LOC110498741 LOC106589412 other downstream 488603 11372725 ~ 11404820 (+)
LOC110498970 cript other downstream 665532 11549728 ~ 11553514 (+)
LOC110498999 LOC106589380 other downstream 1937415 12816635 ~ 12836089 (+)
LOC110499000 hecd2 other downstream 1998693 12861668 ~ 12895798 (+)

Expression


Co-expression Network