G1662536 (LOC106589414)


Basic Information

Item Value
gene id G1662536
gene name LOC106589414
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 11304810 ~ 11306183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1902498
AAGCTGCGTGCTGCGGTGAGACGGTGGCGACGCGGGTTGATGACTGTGCCGCTCAGACTGCGGACCATTGTGCTGCTGCTGTCAGTCTGGTACACACTCCCCTCCGTGTTGGGAGTGAAGGAGCGGGCTGGCCCTCTTACCCCACACTGCAGGCTCCCGGCCGGGCTGCCACCTGCTCCCACGCAGGAGAAAAGCTGGAGGTCAGGGATcagacacactatatacacacatagcttcatacacacactagacacacagctactgtacatacacacaatttaaacataaacacatacacacaactacaatatctacagtatgtaccTCTACTTCCTGCCTGGAGACTGGCCCGGTACAGGAAGTCCAGCTCTGATAACTCTGCCTCCTCAGGGTCACAGGGTTCATGCTGTGCAGGGGCAGGCTGGGAGTTGTATTTTCTGTGGGAGAGGTGTGCCTTAATGGGGAGGCAGCGATCTGGAGGTGTGTCATATGGCGTAACCACGGCATCTGGGCGGTCCAAGCTCCAGGAGGACCAATGACTTGTGATGGTGTTGAAGGTGGAAACTTGATTGGGCCAATCAGAAGACGCGGTGGGCGGGGAGGGGTGGGGCTGACTGCGGGATGAGGGGGGGGTGGGCGGAGGGTCAGACTGTTTGTGTGTGGGCTCAGGGTCTGTATACATGTGTGGGGAGTCCGTGTTTGAATGTGGGGGTCGTGTGTGTTGGGGGTCAgagggtgaatgtgtgtgtgagggggtagtgtgtgtgtctgatataTCCCAGAGTCTGAGAGgtaaagagggaagagagatggccAGGTGTCTGCCTagaggtctcacacacacacccccgacCTGTAACAACTCCTCCAGCCTCACCCCCTGCctttcctcacccctcctcaaccGCTCCTCCTCCTCAACTTTCCTCAGTCCCTGTCCCCCGACCTCACTCATCcccacatcctcctccctcctgacccgttctctcccctcctcaaccTGTGCTGCGGTGTTGTTGGTGGGAGGGGGTTGGAGGGATGAGTGGAGAAGGGTGAGGTTGGGGGAGGGTCTGTAGGAGAGAAGGGGCTGGCCAGGGCCCAGGGCTGCATCCTGGTAGGCTGGCCGGACCTCTTCCCCCTCCTGATTGGGCGTCAGCAGTACTTGGAGCGGGCCAGGCTGTTCACTGATTGGGCGACAGGAGAGAAAGGGCGGGACAGAGACGCTCAGCAGCCATTCACAATCAGAGTAAATAAAGGATGAAACGAAAACACTTTTCAAATGGAATGTGTTGAAACAAAAGCATCTTATGTCAGGCTCATGACTGTAATGTAGGATTCATAAAG

Function

NR:

description
inactive ubiquitin carboxyl-terminal hydrolase 54-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1902498 True 1344 TUCP 0.56 2 11304810 11306183

Neighbor

gene id symbol gene type direction distance location
LOC118941994 LOC106589416 coding upstream 40221 11263275 ~ 11264589 (+)
LOC118941993 LOC106589416 coding upstream 57294 11246200 ~ 11247516 (+)
gdh03 gdh03 coding upstream 73269 11087122 ~ 11231541 (+)
LOC118942035 NA coding upstream 97217 11205423 ~ 11207593 (+)
LOC110498948 LOC106589430 coding upstream 316977 10948832 ~ 10987833 (+)
LOC110498741 LOC106589412 coding downstream 66542 11372725 ~ 11404820 (+)
LOC110498967 LOC106589408 coding downstream 203281 11509464 ~ 11539248 (+)
LOC110498970 cript coding downstream 243545 11549728 ~ 11553514 (+)
msh2 msh2 coding downstream 269831 11576014 ~ 11596216 (+)
ipmkb LOC106589401 coding downstream 427585 11733768 ~ 11753603 (+)
G1662614 NA non-coding upstream 1125 11300790 ~ 11303685 (+)
G1662606 NA non-coding upstream 13500 11291090 ~ 11291310 (+)
G1662600 NA non-coding upstream 19585 11285003 ~ 11285225 (+)
G1662527 NA non-coding upstream 160552 11135515 ~ 11144258 (+)
G1662524 NA non-coding upstream 181106 11122066 ~ 11123704 (+)
G1662639 NA non-coding downstream 52878 11359061 ~ 11359376 (+)
G1662652 NA non-coding downstream 88812 11394995 ~ 11395662 (+)
G1662659 NA non-coding downstream 122165 11428348 ~ 11431420 (+)
G1662675 NA non-coding downstream 148313 11454496 ~ 11492719 (+)
G1662752 NA non-coding downstream 289360 11595543 ~ 11601259 (+)
LOC110498940 LOC106589438 other upstream 437844 10850770 ~ 10866995 (+)
LOC110499585 NA other upstream 499559 10802684 ~ 10805251 (+)
G1662037 NA other upstream 828121 10476167 ~ 10476689 (+)
G1661477 NA other upstream 1252721 10051622 ~ 10052089 (+)
LOC110498922 cssa28h17orf62 other upstream 2777290 8524125 ~ 8527761 (+)
LOC110498999 LOC106589380 other downstream 1515496 12816635 ~ 12836089 (+)
LOC110499000 hecd2 other downstream 1576774 12861668 ~ 12895798 (+)
G1665637 LOC106589364 other downstream 2362989 13669172 ~ 13672001 (+)

Expression


Co-expression Network