Gene
RNA
| Item | Value |
|---|---|
| gene id | G1664867 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 13029117 ~ 13029974 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1905103 | False | 805 | lncRNA | 0.33 | 1 | 13029117 | 13029921 |
| TU1905105 | False | 648 | lncRNA | 0.35 | 1 | 13029117 | 13029764 |
| TU1905113 | True | 858 | lncRNA | 0.32 | 1 | 13029117 | 13029974 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110499004 | tbc1d12 | coding | upstream | 1401 | 13009876 ~ 13027716 (+) |
| LOC110499002 | tnks2 | coding | upstream | 53421 | 12959881 ~ 12975696 (+) |
| LOC110499000 | hecd2 | coding | upstream | 133319 | 12861668 ~ 12895798 (+) |
| LOC110498999 | LOC106589380 | coding | upstream | 195652 | 12816635 ~ 12836089 (+) |
| LOC110498997 | LOC106589383 | coding | upstream | 223615 | 12801378 ~ 12805502 (+) |
| noc3l | noc3l | coding | downstream | 157 | 13030131 ~ 13050931 (+) |
| fra10ac1 | fra10ac1 | coding | downstream | 161475 | 13191449 ~ 13207273 (+) |
| rbp4 | rbp | coding | downstream | 216600 | 13246574 ~ 13248412 (+) |
| LOC110499012 | myof | coding | downstream | 243278 | 13273252 ~ 13297836 (+) |
| LOC110498743 | NA | coding | downstream | 268641 | 13298615 ~ 13305053 (+) |
| G1664869 | NA | non-coding | upstream | 22566 | 13006345 ~ 13006551 (+) |
| G1664868 | NA | non-coding | upstream | 27038 | 13001551 ~ 13002079 (+) |
| G1664854 | LOC105025155 | non-coding | upstream | 42315 | 12986168 ~ 12986802 (+) |
| G1664850 | NA | non-coding | upstream | 45096 | 12983769 ~ 12984021 (+) |
| G1664694 | NA | non-coding | upstream | 46433 | 12982378 ~ 12982684 (+) |
| G1664899 | LOC106578971 | non-coding | downstream | 43882 | 13073856 ~ 13075703 (+) |
| G1664966 | LOC106578978 | non-coding | downstream | 117801 | 13147775 ~ 13152082 (+) |
| G1664975 | NA | non-coding | downstream | 159095 | 13189069 ~ 13189301 (+) |
| G1664976 | NA | non-coding | downstream | 159404 | 13189378 ~ 13264290 (+) |
| LOC110498970 | cript | other | upstream | 1475951 | 11549728 ~ 11553514 (+) |
| LOC110498741 | LOC106589412 | other | upstream | 1649455 | 11372725 ~ 11404820 (+) |
| G1662536 | LOC106589414 | other | upstream | 1722934 | 11304810 ~ 11306183 (+) |
| G1665637 | LOC106589364 | other | downstream | 639198 | 13669172 ~ 13672001 (+) |
| G1666194 | NA | other | downstream | 1571347 | 14601321 ~ 14624214 (+) |
| G1666308 | NA | other | downstream | 1755618 | 14785592 ~ 14785920 (+) |
| G1667601 | NA | other | downstream | 2309638 | 15339612 ~ 15341184 (+) |
| LOC110499057 | LOC106589330 | other | downstream | 3104496 | 16134445 ~ 16135964 (+) |
