G1665189


Basic Information

Item Value
gene id G1665189
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 13049344 ~ 13081036 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1905490
ctgggatcttttatttcagtttatgaaacatggaaccaacacttaagttttatatttttgtcacacacacacccttcagaaagtattcatacccctggacttattccaaacgttgttaaagcctgaattcaaCAGACTTTAATACCCCATAATACCaagcaaaaacttttttttattgaaaatgaaatacagatatctagcttaagtattcacacccctgattcAACACGATATAATTATATTTGGCAACGATTAAAACTAAGCctcagagctttccacacctggtaCAAAATAATTGTAAAATGCTTCCAAGGTCTGTCAAGtagatcattgctagacagccattttcagttcttgccatagatttaatacaatttaagtcaaaactgtaactaggccacgcAGGAACATTAATAgtaatcttggtaagcaactcgtgtatatttgaccttgtgttgaagtgttgttggatttgcccccaacataacactttgtattcagcacAAAAAGTGTAATTCTTCGCAGTTGTACTTTAGTTTATTGTGAACAGGATGAAAGTTTTGGAATATTCTTTACCCTGTATAGACTTCCTTTTCACTCGTTTGGGTTtgtataactacaatgttgtcgaCACATCcagttttctcctttcacagcaATTAAACTGTTttgaagtcaccattggcctcatggtgaaatccctgagcggtttccttcctctccggcaactgagttaggaatgaAGTTATTTActctggatactaAATGTCAGCTTTTTAAAAATGGAttcttacccatctaccaattcgtgcccttctttgcaaggcattggagaACCTCCTTGGTCTGAAATTCACTGCtaaactgagggaccttacagatagagagaggttGTCATTAAAAACAATAATGAtatagagtgagtccatgcaacttatgcaCATTTTTAATCCTGAACAtaattaggcttgccataacaaaggggttgaatacttgattTAAGCTtctatacatttctaaaaacacaattccactgacattatggggtattgtgtgtaggccagtgacaatctcaatttaatccattttaaattcaggttgtaacaatgtggaaaaagtcaaggggtgtgactactttctgaaggtcCTGTAGGTCAGGGATATGAGTAATCAATGAGGCAGGTGGTTTAACTCAACACTTAATTGTATCCATTCTAGTCAAAGAGCAAAGAGAGCAATCAAAAAGCAATGTTGCCAGCATACGGTTGTTATTTTGCAGTCCATTTAGAACTAAGATACAGGGCACAAAGGAAATTGGGTGTTTTCCGGTGGGGTCTGAATTATTATGTGCTGTTGGTCTGTGGTAGAACTGCAGAGAAATCCAGCGACATAGGATCCTCTTCCTCCGCTGAGAGAACACGATCAATCTGCTGCTTTAATTTATCATCCAGCAGGGCAAGGCCTATCGTGA
>TU1905491
ctgggatcttttatttcagtttatgaaacatggaaccaacacttaagttttatatttttgtcacacacacacccttcagaaagtattcatacccctggacttattccaaacgttgttaaagcctgaattcaaCAGACTTTAATACCCCATAATACCaagcaaaaacttttttttattgaaaatgaaatacagatatctagcttaagtattcacacccctgattcAACACGATATAATTATATTTGGCAACGATTAAAACTAAGCctcagagctttccacacctggtaCAAAATAATTGTAAAATGCTTCCAAGGTCTGTCAAGtagatcattgctagacagccattttcagttcttgccatagatttaatacaatttaagtcaaaactgtaactaggccacgcAGGAACATTAATAgtaatcttggtaagcaactcgtgtatatttgaccttgtgttgaagtgttgttggatttgcccccaacataacactttgtattcagcacAAAAAGTGTAATTCTTCGCAGTTGTACTTTAGTTTATTGTGAACAGGATGAAAGTTTTGGAATATTCTTTACCCTGTATAGACTTCCTTTTCACTCGTTTGGGTTtgtataactacaatgttgtcgaCACATCcagttttctcctttcacagcaATTAAACTGTTttgaagtcaccattggcctcatggtgaaatccctgagcggtttccttcctctccggcaactgagttaggaatgaAGTTATTTActctggatgctcaaagggatactaAATGTCAGCTTTTTAAAAATGGAttcttacccatctaccaattcgtgcccttctttgcaaggcattggagaACCTCCTTGGTCTGAAATTCACTGCtaaactgagggaccttacagatagagagaggttGTCATTAAAAACAATAATGAtatagagtgagtccatgcaacttatgcaCATTTTTAATCCTGAACAtaattaggcttgccataacaaaggggttgaatacttgattTAAGCTtctatacatttctaaaaacacaattccactgacattatggggtattgtgtgtaggccagtgacaatctcaatttaatccattttaaattcaggttgtaacaatgtggaaaaagtcaaggggtgtgactactttctgaaggtcCTGTAGGTCAGGGATATGAGTAATCAATGAGGCAGGTGGTTTAACTCAACACTTAATTGTATCCATTCTAGTCAAAGAGCAAAGAGAGCAATCAAAAAGCAATGTTGCCAGCATACGGTTGTTATTTTGCAGTCCATTTAGAACTAAGATACAGGGCACAAAGGAAATTGGGTGTTTTCCGGTGGGGTCTGAATTATTATGTGCTGTTGGTCTGTGGTAGAACTGCAGAGAAATCCAGCGACATAGGATCCTCTTCCTCCGCTGAGAGAACACGATCAATCTGCTGCTTTAATTTATCATCCAGCAGGGCAAGGCCTATCGTGA
>TU1905492
ACCATaaccaattaatgaacatgcacctgtggactggtcgttaagacactaacagcttacagacaatagagagaggttGTCATTAAAAACAATAATGAtatagagtgagtccatgcaacttatgcaCATTTTTAATCCTGAACAtaattaggcttgccataacaaaggggttgaatacttgattTAAGCTtctatacatttctaaaaacacaattccactgacattatggggtattgtgtgtaggccagtgacaatctcaatttaatccattttaaattcaggttgtaacaatgtggaaaaagtcaaggggtgtgactactttctgaaggtcCTGTAGGTCAGGGATATGAGTAATCAATGAGGCAGGTGGTTTAACTCAACACTTAATTGTATCCATTCTAGTCAAAGAGCAAAGAGAGCAATCAAAAAGCAATGTTGCCAGCATACGGTTGTTATTTTGCAGTCCATTTAGAACTAAGATACAGGGCACAAAGGAAATTGGGTGTTTTCCGGTGGGGTCTGAATTATTATGTGCTGTTGGTCTGTGGTAGAACTGCAGAGAAATCCAGCGACATAGGATCCTCTTCCTCCGCTGAGAGAACACGATCAATCTGCTGCTTTAATTTATCATCCAGCAGGGCAAGGCCTATCGTGA

Function

NR:

description
nucleolar complex protein 3 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1905490 False 1471 lncRNA 0.38 2 13049344 13050923
TU1905491 False 1483 lncRNA 0.38 2 13049344 13050923
TU1905492 True 656 lncRNA 0.39 2 13049344 13081036

Neighbor

gene id symbol gene type direction distance location
LOC110499003 LOC105025155 coding downstream 61354 12985415 ~ 12987990 (-)
LOC110499001 LOC106589379 coding downstream 100879 12944394 ~ 12948465 (-)
LOC110498996 LOC106589382 coding downstream 237927 12805293 ~ 12811417 (-)
kif20bb LOC106589381 coding downstream 250561 12777485 ~ 12798783 (-)
LOC110498993 LOC106589384 coding downstream 305046 12733052 ~ 12744298 (-)
slc35g1 slc35g1 coding upstream 68485 13149521 ~ 13157107 (-)
LOC110499008 lgi1 coding upstream 76748 13157784 ~ 13170700 (-)
pde6c LOC106589370 coding upstream 126731 13207767 ~ 13252579 (-)
cep55l cep55 coding upstream 176297 13257333 ~ 13272310 (-)
LOC110498744 NA coding upstream 225154 13306190 ~ 13309377 (-)
G1665188 NA non-coding downstream 18350 13030037 ~ 13030994 (-)
G1665184 NA non-coding downstream 19592 13029118 ~ 13029752 (-)
G1665168 NA non-coding downstream 42812 13006318 ~ 13006532 (-)
G1665167 NA non-coding downstream 47636 13001488 ~ 13001708 (-)
G1664859 NA non-coding downstream 60724 12988340 ~ 12988620 (-)
G1665264 NA non-coding upstream 105379 13186415 ~ 13186667 (-)
G1665270 NA non-coding upstream 125381 13206417 ~ 13207262 (-)
G1665263 rbp non-coding upstream 159446 13240482 ~ 13248413 (-)
G1665406 NA non-coding upstream 331997 13413033 ~ 13413348 (-)
G1664239 NA other downstream 798238 12250150 ~ 12251106 (-)
G1663264 NA other downstream 1506253 11542616 ~ 11543091 (-)
LOC110498953 NA other downstream 1890568 11121913 ~ 11158776 (-)
G1662039 NA other downstream 2572159 10476963 ~ 10477185 (-)
G1661001 LOC106589450 other downstream 3589229 9422783 ~ 9460115 (-)
G1665402 LOC106589366 other upstream 320245 13401281 ~ 13407377 (-)
G1666656 LOC106589183 other upstream 1141163 14222199 ~ 14223019 (-)
G1666788 NA other upstream 1343937 14424973 ~ 14425314 (-)
LOC110499033 LOC107708254 other upstream 1543319 14616546 ~ 14647860 (-)
G1667100 LOC106589344 other upstream 1809339 14890375 ~ 14897681 (-)

Expression


Co-expression Network