G1665402 (LOC106589366)


Basic Information

Item Value
gene id G1665402
gene name LOC106589366
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 13401281 ~ 13407377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1905723
TCTTTATTTGAGCGCTCAGCCACTCCGTAGCCTCAGAGAGATCACAGCAAAAAGGGTGGGGAGCAGAATCAAAACAAAAAGTAGTTCAACACATTTAAGTTCATTCATTCATATTCAGTCTCAACACAACCATTTAAAGTGCATTTCAGATTGAGATGTTCCTTTTTTGACAAGCTCACAGTGACAATTACACAGACAGATATTGGATAGACATAAATAATTAGTATTGTGTACAACAGTATGCTCTCAATCGTTAACGTATTGCACATTAAATAACAGTATAGCAAACATGGAATTAAAACAGAAGTGGCAGGAAGATAAACACAAATACATGAGGAAACACAACCGATCCTCTGAGCAGAGTCTCTCCGTTTTAATTTCCTGTCATAGGTGAGGAAAATAAGTTATACAGTACAATGTACAGTCAATGTGATGCTAGCGAGGTGAAAGAAACAGAACAGTCGTCATACAGTACATCTGCCATATTGATTAGTGTATTCAAAACAGACTCATGTTATGGCGTTTAAGTTCACAGCAGTGATGTCAGACGACAACAAAGCAGAAGATTATGGACCTGAACCCAGTCCTCACTGTCCATAAGATAAGTGGCCAGGACTTTCTAATTACCAAGTGACCTGACCAGAagaatacataaaaaataaaataataactgGGGTAGTGATAGCCCAATTTTTTCTTGGCAGGTCACAAGGTCGGGGACAAGTCTAGGCCCCCACATCTGTGaaatgggggggggggggcgacaattgcgttccaaatagcaccctattccctatatagtgcactacttttgacaagggctcataaggttctggtcaaattgtgtgcactataaaagggaatggggtgccatttgagataatGAGGGACATTAAACAGATCGTAATGAGCAGCAAACACATGCCGCTGTTTACAATGTAATTTCATGAATTAAACTACTGTTTCAACATTTCCAGTTTAAAAAAGAGGAAAAAAAGTAAAATGAGCTTAAAAACTGAGATTTGTTCTAAATTCGTGAAAAGCCGAGCAGCACAGCAGCAGATCTACTTAAGACTGCTCACAAGGACAAGGGGGCACACCAGAGTGCATTGAGACGGCAGCAAAGCAAATCTGAACACTTGAAATTCAAAACGTCAGAGCTGAGACAACACTGGAAACATAGCTTGGCCTGCTTTTTGAATACAGAGGATGcttctgtagtgagacagacaaacaggttTGCCCTTCCCAGTCAGAACAGGTTGTCTGTGTGAGTCTGGGACAGTGAATACTAAGTGAGGCTGGCATGCTAACATCTGATAGCCTGGAAGAGCATAATGCATCCCTGTGTTGAACCCAGTAGAGGGGCGGAGGAAGCCCCACTGGCAGCCAGATGCAGCAAGGAGTGGGAATCACCTGTGAACCCAAGGCAGACCTCCTTCCTCTTTCAGCAACACAGCCAGGCAGTGGGACCAAGCTCCAGAACCACACTCATCTACATACCAAAATGTTATGTTCAGGACTACGGGAAAGGAAGTCACAAAAGCAGGCACTTCTGTAATACACAAGAACAGCAAGAGTGCTTTACGGTGAATACTGCTACGTGATGCTATCCCATGCAGTCATTTTGAGGGCAAGTTATTTACTTGACATTTGTTTAATCTACATACCATAATATGGTAAGCCAAGCAAAGCTAGACAACCGAAAAAATAATAATGCATGACTAACAAGTCTCAACCCTTCTCAATAACTTTAAGTCACTCCTATTTCGGGGGTTTTGGGTGAGAAATTCTCAGAAACAAACATGTTAGGGCTTCTGTTAAGATCTCGTTAACATTAAAAACGAAATATTCCTTCCCCCTGCACATTCTAAATCCTTTAAGTCAAGGACTCTGACTGTCAAACAGGAATTGATTAAATTAATATCTTCCTCATCCCGACAAACCTCAaatagtttgtttgtttgttcatcattgaagagattaaatgtataaaaagtatttggttcttaTCTGGGTGGGATTGGAAGCAGCCGTGCATTCCAAACAGCAGAGTTGTTTTGGGGTGACGTTTAACAAGTCCTGAGGCAGATTCAGATCAGGGTGATGTTGTACGCATGCGTTGTAGGGTTGCTGCAGAAAGCACTTCAAATCGCTTGACAAAAACGTACAAGGTGAGTGCTCGTGATGACCATTATGGGGCATGGCTTCCAATCATTTAGGAATGGGAAGACAAATACTTGGTGGCAGCAAAACAAGTGTTTCAGATATCATGTACACTTACATCTGCCTTTACATATGCCCATAACGAGAAGGATTCATGGAGGCAACCAGCTCATTGCCCATGACTAATGTACCACTGTGACTTATCTTCCATGACTAGGGCACAACTGTGTTGCATAGAAAAACATGTAAAGCTTTAGCTGGGGAAGAAGAAATGCCAAATTAAGTTACAGAAATAGGCATTTTTATTCTAGTCTTTGAGATCGTTTTGACTGGGTGACGTTCTGCTCATTCTACAACGTACACTCAGCCAACTGACTTGGAATCAAAAGATCAGTTATGACATCAAGGAAATAAGGACCTGATAGGTCAAGGGTACAAATGTGCCCATTGGTTACTACTTAAAGCTCTCAAGGACTAAACATAGTAACAGACCAGGAAGTAGTTAGACATGATGGCTTTGAAGAAAAGCAAATGAGTCATTgtgtccctctccatcctccttgACACTCTGCCCCACCGTGATGCACTCATTGTAAGTCTATCACCTTGAGGAAGGAGTGAGAGAAGTAGTAGTGAACAATAAAAACTATAAAAAATGGAGAGTTAAGTCTCAGCAGATGTCAAAGGAGCATGCCTGGCCCTGCTGTCGACAGGGACACACTGAGCGTGTGCGTAACCCACTCGACATCCTCACACCCCTCCACTGTGCCACTCAGCCGCGTTACCATGCCAACTGGATCCGACTCAGAATCATTACGGAATCACGTGGAAGTTGCCGCCAGCCTCTGCATTACACCAGCAACATTGTTTCATGCTAGGAAATTATTTATCTTTCTTTCTGTCCCCTTCTATTCAGGGACCTGGGCCTGAAGCACGTCTGCTGTGTAGTTGGGCTGAGAGGCTGAGCTCTTCTCTGGTGCAGCCTCATTAAGGTAGCATGTGGGTGACCCTCTACCCACAGACCTAACTAGACCTGCTCATGATGGAAGCACAGGGGGAACAAAGGTGGCTCAGAGAGCACCAATTGCACAAGATGGCTCTTCTGATCTCTTTGTTGTCCCCGTGTCGCAATCAAACTGCACCaccacacagacaaagacagataCAGACTATCGGTAGACAGAAGAGTACAGTGCAACATACAGCTACTTTTGAGAGTGCACTTAAAAACGTAAGGCATTCTCAGGGTACAAGGCAGAAATAATAAAGGTGTTTCAAAACCAGAGAACACAGGGGGCTGCTgcggggagaacggctcataaacCATGtgttgtatttgataccattccaatgactccgctccagccattaccacgagcccccccccccccaaattatggtgccaccaacctcctgtgagagACATAATACTGGCTGTGTAGCAAGGGGAACTTTAGAACATCACTCAGCAAgtagaattccccccccccccagtttagCCAGAGGGACAATATCTGAAGTAACAAACTATATTCTCTAGTCTATACAACCAAATGTTCCCCTTCAAGTCAAGAGATTCTCTGTTCCTGTAACCGTTCCACTGTGTTATATTGCCTTAATCCCTCTACCACAGTTACGCAGAGATTATATCAGGTAAATTAAAGTTCCCGTCTACAGAGAAATCAAAGTTCTACTGAGCCCAACCACTACATACAGGCAGTTGTTCAGTAAGTAAAGCTTGACATGAACTTTCTTAGCCACATGTCCTTCAGACAAGtagaactgttttttttttacttgtccgAAAGCTCAAGTCACTTGTTTATCTATTTGTAAGGTTAAAATATTCAGTGTTCAACGAAAATCTTGACAGCATAGGAATTACTTGTCAATTAagctattaaaaaatatatattcttagACTTTGGCAGAATTACATGGCCAGTATTGTACATGGCCAGCATTGAATAGGAGAGGATTTTAGTGCTTGCGAGACGGTTTTACAAACGGAGTATGCAGAATTGGTTTCATCCACTGTGCACACGTATCAACTACGTGTCCGACATTTGCAGTTATACACGAGCGCGGGTCAAAGTATATTTTAGGCCATCGGACATTACATTAATACATGCTAATAGCTAAATAGTTAAGTAGTGAGAACAAGCCAATCTACACTGTTGTATATCATTACTTTACCTGCTGCGCAAATGTAGCTCTCCTCTGACAAGGTGATGCAAACTTTTCCAGCATTTTCATTGTCGACCAAAAATGAGCTGGgcaaataactcactaactagcaatgAATATCAACATGTGCACATGCGgcttgctttgatctcaaaaacGCATCTCGTGACTGCATGATTGAAAGATCGCTTGTGCCCGTCAATGCAGGCCTACAATACTCTAAAGCGCTCTGCAGAGATTAGGAGGACACTGATCCAATTCGCCTAATTGTTTGTGATTTCTTTTAtactaaacatttttttttacttgtccagTCGGACAACTTAAATCTACATTCTTCATAACCAATTTTTTTTGGGGAAAGCAGACAAgcattaatgtcgagccctgtaaaGTTCAACCCAACTGAGTATGTATAAGTAACAATAAATGCTATATTGGGGCCAGATAACGCGGTGTTCCTAAGCATGTTCATTATCTTGGGAAAAGTTTTGGCAAGAAAGTAAAGTTGCAATTGTAGCTTGTTGGGGCTGGAGGGAATATAAAGTTAAGCATCCTGCCAGTTCCCACTTTGAAACAGAACTTCACAAAAACAACAATCTATTTATCTGCGTACAGATAGTGTTGAAgcaagtttttttgggggggataaacAATAAGGTGTTATGCTTGACTTCTTCGTCTGAGACGATATCAAATGTGTACATGGGACAAAAGATTTTTATGACCTTGAGTGATTCTTATTGGAAGAGGTTAGATAAAATATTATTTTgggttatatataatatataacctaAAATAATATTTTAAGTCTGCATGTCATCCTTTCTCACAGGGTAGACATGGTAACCTTACTAAGGGGAGGTCGGAAGCCTCTAGAAGAAGTCTGATCTTTTGGGTCTGAGTGGGTAGAGGGTGGTGCTGAATGGCCTTACTAGAGGGCACTGTTTGAGAATTGAGAGAGAGCAATCAGTGGCCCTTTGGCTTGGGGAGTCGTAAGAGGGTGGGAGGGCCTAGACCTCTGGCCTTGAGACCACCACTCTCTGGTTCTCTGAGGCCTGGAGTCTGTTTGGGTGCTCTGGTCCGGGGGAAGGCGGGCAGGGTAGGGCCCAGAAACGAGGCAGAGGACTGGGGTGTGGAACTGTAGCAGGGTTGACCTCTGGAGGCAGGTGGGAGCAGACTCAGCCTGAACTGTGGAGCTATGTGGCCCGGCCTGAGACCACCCCTACCCTGGATTCCTCTCACCACCCTGGGGAAGCCTGCCATGGAcatctgggtggtggtggtggttgtggtggtggggccTTCATGTGGCCTCTTAGGGATGGAGGCTTTCTTCAGAGAGCCGGGGGACTGCGAGAGACAAGGTGGAGGGATCCTTTTGGCTGAGTCCAGCCTGAGTCTTGATCCAGGGTGGGGAGGAGAACATGTCTGGCCCTCCAGACCCTCAGAGTCACTGATCTTCAGCTGGGTGCTGAGCAAGAGGCTAAGTTCTTCTGAGCCAGGGAAACAGCCAGCAGGAGGGGTGGAAGCAGGGCTAGGGCAAGCCAGGCCAGAGCGGGAGCTGTGCTGGGCCCTGCTGGCCAGACTGTCCCCCCAGCCACAGCCAGGGTTAGAGGAGGCCAGCTCACTGGGGGCCTCTGTGTGGGCTGAGTTTGTTAATCTTTCCTGGGAGTGGGGTTGGTGCACCCTGTTGGGCCATGGCCTGGAAGGCTGTAGT

Function

NR:

description
serine-rich coiled-coil domain-containing protein 2-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1905723 True 6073 TUCP 0.44 2 13401281 13407377
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110498744 NA coding downstream 91904 13306190 ~ 13309377 (-)
cep55l cep55 coding downstream 128971 13257333 ~ 13272310 (-)
pde6c LOC106589370 coding downstream 148702 13207767 ~ 13252579 (-)
LOC110499008 lgi1 coding downstream 230581 13157784 ~ 13170700 (-)
slc35g1 slc35g1 coding downstream 244174 13149521 ~ 13157107 (-)
LOC118942003 NA coding upstream 135444 13542821 ~ 13550848 (-)
LOC110499015 LOC106589364 coding upstream 261560 13668937 ~ 14093823 (-)
LOC110499016 LOC106589362 coding upstream 815793 14223170 ~ 14270879 (-)
LOC110499023 argi1 coding upstream 1055020 14462397 ~ 14468271 (-)
heatr1 heatr1 coding upstream 1061089 14468466 ~ 14492898 (-)
G1665263 rbp non-coding downstream 152868 13240482 ~ 13248413 (-)
G1665270 NA non-coding downstream 194019 13206417 ~ 13207262 (-)
G1665264 NA non-coding downstream 214614 13186415 ~ 13186667 (-)
G1665189 NA non-coding downstream 320245 13049344 ~ 13081036 (-)
G1665406 NA non-coding upstream 5656 13413033 ~ 13413348 (-)
G1665407 NA non-coding upstream 7550 13414927 ~ 13415231 (-)
G1665419 NA non-coding upstream 23330 13430707 ~ 13431621 (-)
G1665526 NA non-coding upstream 181841 13589218 ~ 13589438 (-)
G1666557 NA non-coding upstream 602517 14009894 ~ 14010228 (-)
G1664239 NA other downstream 1150175 12250150 ~ 12251106 (-)
G1663264 NA other downstream 1858190 11542616 ~ 11543091 (-)
LOC110498953 NA other downstream 2242505 11121913 ~ 11158776 (-)
G1662039 NA other downstream 2924096 10476963 ~ 10477185 (-)
G1661001 LOC106589450 other downstream 3941166 9422783 ~ 9460115 (-)
G1666656 LOC106589183 other upstream 814822 14222199 ~ 14223019 (-)
G1666788 NA other upstream 1017596 14424973 ~ 14425314 (-)
LOC110499033 LOC107708254 other upstream 1216978 14616546 ~ 14647860 (-)
G1667100 LOC106589344 other upstream 1482998 14890375 ~ 14897681 (-)
G1667916 NA other upstream 1932308 15339685 ~ 15415178 (-)

Expression

G1665402(LOC106589366) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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G1665402(LOC106589366) Expression in each Bioproject

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G1665402(LOC106589366) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network