G1665406



Basic Information


Item Value
gene id G1665406
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 13413033 ~ 13413348 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1905727
gttcatttctctgccataagccacctccaacatcgttttaaagagtttggcagtacgcccaaccggcctcacaaccgcaggccatgtgtatggcgtcatgtggacGAGCAGTTTGCCGATGTCAATATTGTGAATTGGGgttaggcataagctacggacaataaACACTTACATTTTTTCGATGCCAATTTGAATACAcaaagataccgtgacgagatcctggggcccattgtcgtgcccttcatccgccgccatcacctcatgtttcagcatgataatgcacggccccatgtcgcaaggatctgtacacaattcc

Function


NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1905727 True 316 lncRNA 0.49 1 13413033 13413348

Neighbor


gene id symbol gene type direction distance location
LOC110498744 NA coding downstream 103656 13306190 ~ 13309377 (-)
cep55l cep55 coding downstream 140723 13257333 ~ 13272310 (-)
pde6c LOC106589370 coding downstream 160454 13207767 ~ 13252579 (-)
LOC110499008 lgi1 coding downstream 242333 13157784 ~ 13170700 (-)
slc35g1 slc35g1 coding downstream 255926 13149521 ~ 13157107 (-)
LOC118942003 NA coding upstream 129473 13542821 ~ 13550848 (-)
LOC110499015 LOC106589364 coding upstream 255589 13668937 ~ 14093823 (-)
LOC110499016 LOC106589362 coding upstream 809822 14223170 ~ 14270879 (-)
LOC110499023 argi1 coding upstream 1049049 14462397 ~ 14468271 (-)
heatr1 heatr1 coding upstream 1055118 14468466 ~ 14492898 (-)
G1665263 rbp non-coding downstream 164620 13240482 ~ 13248413 (-)
G1665270 NA non-coding downstream 205771 13206417 ~ 13207262 (-)
G1665264 NA non-coding downstream 226366 13186415 ~ 13186667 (-)
G1665189 NA non-coding downstream 331997 13049344 ~ 13081036 (-)
G1665407 NA non-coding upstream 1579 13414927 ~ 13415231 (-)
G1665419 NA non-coding upstream 17359 13430707 ~ 13431621 (-)
G1665526 NA non-coding upstream 175870 13589218 ~ 13589438 (-)
G1666557 NA non-coding upstream 596546 14009894 ~ 14010228 (-)
G1666640 NA non-coding upstream 715132 14128480 ~ 14129207 (-)
G1665402 LOC106589366 other downstream 5656 13401281 ~ 13407377 (-)
G1664239 NA other downstream 1161927 12250150 ~ 12251106 (-)
G1663264 NA other downstream 1869942 11542616 ~ 11543091 (-)
LOC110498953 NA other downstream 2254257 11121913 ~ 11158776 (-)
G1662039 NA other downstream 2935848 10476963 ~ 10477185 (-)
G1666656 LOC106589183 other upstream 808851 14222199 ~ 14223019 (-)
G1666788 NA other upstream 1011625 14424973 ~ 14425314 (-)
LOC110499033 LOC107708254 other upstream 1211007 14616546 ~ 14647860 (-)
G1667100 LOC106589344 other upstream 1477027 14890375 ~ 14897681 (-)
G1667916 NA other upstream 1926337 15339685 ~ 15415178 (-)

Expression



Co-expression Network