G1666656 (LOC106589183)


Basic Information

Item Value
gene id G1666656
gene name LOC106589183
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 14222199 ~ 14223019 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1907060
TTTTTACTTGAGCCAGATAATCTACACAGGGTATCAAACACGaatcaacatgtttttttatgaAAAGAAAATAAACAATTACGAAGCACAAACAAATAAAACCAGTTATTTTGTGCCACTAGTTCTCTCCCACAGGTTCATAAACCCTCTAAGCTCTGCCTTCTGGTCTTCGCAGGGCGCACGCATCACGTTCCCACTGTCTCTACATGCGGTATCGTATGCACCTGGCCCAGGTAGCTCAACAGTTGAGTCTTCTGCTGTATCGTTCACTGTTGGCATGCCAGTTGGGGCCGTGCGCTCTAGCTCGGTGCTCTCAAGTTCAGTGGTGCTGAAATCCGTGCCGCAGGGCCTGTCCTGCAACAACTCGCTGAGCGTCGATATGTATATCTGCGCCATCTGAAGAGTCTCTGACTTGGACAGCTTCTTGTCGCTCTCCAGGTTGGGGATGACGCTCCTGAGGCGGTCGAATGCGACATTGAGCCCGAGCATCCTCCTCCTCTCGCGGGAGTTTGCAGCCATACGCCGACGCCTTTGCGCTCTATCGATGGTGCTCCGGTCCTGCTCAATGTATCTGAGCCCTGGTAATCTGAGCTCCACAATAGCGCACGGGTCACACTTTCCCCTGCGCTCTGCCCTCTCTTCTATCCAACTGGTCTGCACAAGAGCTCCATGTGGACCGTCTATACGACGCGCTTGCACTTTCAAATCCGCACCAGTGTCTGCGTCTCTGGAGATAAATGGCACAAATAGACTTTTGCGGCGTGGCATTGTCCTGAGCAGGGTGTAGATTCAACGGTGCAGACGTGTAACTGAACTTCTAG

Function

NR:

description
uncharacterized protein LOC110499017

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1907060 True 821 TUCP 0.52 1 14222199 14223019
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110499015 LOC106589364 coding downstream 128376 13668937 ~ 14093823 (-)
LOC118942003 NA coding downstream 671351 13542821 ~ 13550848 (-)
LOC110498744 NA coding downstream 912822 13306190 ~ 13309377 (-)
cep55l cep55 coding downstream 949889 13257333 ~ 13272310 (-)
pde6c LOC106589370 coding downstream 969620 13207767 ~ 13252579 (-)
LOC110499016 LOC106589362 coding upstream 151 14223170 ~ 14270879 (-)
LOC110499023 argi1 coding upstream 239378 14462397 ~ 14468271 (-)
heatr1 heatr1 coding upstream 245447 14468466 ~ 14492898 (-)
LOC118942475 NA coding upstream 258373 14481392 ~ 14481522 (-)
LOC110499028 cssa28h16orf62 coding upstream 305995 14529014 ~ 14544454 (-)
G1666697 NA non-coding downstream 11141 14210838 ~ 14211058 (-)
G1666640 NA non-coding downstream 92992 14128480 ~ 14129207 (-)
G1666557 NA non-coding downstream 211971 14009894 ~ 14010228 (-)
G1665526 NA non-coding downstream 632761 13589218 ~ 13589438 (-)
G1665419 NA non-coding downstream 790578 13430707 ~ 13431621 (-)
G1666832 NA non-coding upstream 217156 14440175 ~ 14440400 (-)
G1666782 NA non-coding upstream 231523 14454542 ~ 14458831 (-)
G1666780 NA non-coding upstream 271956 14494975 ~ 14508286 (-)
G1666875 NA non-coding upstream 365960 14588979 ~ 14591016 (-)
LOC110499033 LOC107708254 non-coding upstream 393692 14616546 ~ 14647860 (-)
G1665402 LOC106589366 other downstream 814822 13401281 ~ 13407377 (-)
G1664239 NA other downstream 1971093 12250150 ~ 12251106 (-)
G1663264 NA other downstream 2679108 11542616 ~ 11543091 (-)
LOC110498953 NA other downstream 3063423 11121913 ~ 11158776 (-)
G1662039 NA other downstream 3745014 10476963 ~ 10477185 (-)
G1666788 NA other upstream 201954 14424973 ~ 14425314 (-)
G1667100 LOC106589344 other upstream 667356 14890375 ~ 14897681 (-)
G1667916 NA other upstream 1116666 15339685 ~ 15415178 (-)
LOC110498749 s39ab other upstream 1343539 15421293 ~ 15577049 (-)

Expression

G1666656(LOC106589183) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
End of interactive chart.

G1666656(LOC106589183) Expression in each Bioproject

Bar chart with 13 bars.
G1666656(LOC106589183) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002819 NA coding CM030139.1 CM030139.1 3378606 ~ 3379298 (-)