G1667916


Basic Information

Item Value
gene id G1667916
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 15339685 ~ 15415178 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1908414
TTTGTTTGTGGGTGGGGACTACATATCCCATCGGTCACTGCCCAAATTCTTTGGGTTAGCAGCTCTCAACATGGCTCAGTTATGTGCTGGCTTTTACCGCGTGATACGCGACTTTTTGGAAATGCAAAGATGCGTGAGAAACTAGTGCGCGGCTGCACTGCAAACCGCTGGATCGCGCTATACAGTCGAACAAGGCAACGCAAAGAACAGACTGGACTACGCGAGAACATTTCATCCAAATCTGGATTTATTCTGTGTTAAGTGGATTTGATAAATTAAGCAGTTTTCGCAGTCGTGCTCTTTGGTTCATTGACTATTGGATCTCATGGGATAGCCTATCCCTTGTCCCACGGTCAGATGTGTGTGCGTTGTGGAGAGCTTTGTATGGAGTTGTGTTCAGTTGAggatgattttttatttttttacttgtgcgtGGGGTTCTTCATTTAGATTTCGACGCCCATATATTTTTACGCATCGTGCTTATGAATATTTATATCCCGTGTCATATCCATAGTCTACAGTTGCCCTGGAGTTGGGCTTTCAGAACCCATCACCATCAGTTACACAGGTGGATGTCACATAACGGCCCTGTGCGTGATGTAAGAAGAAACTGGATTTTGGATTGTAAAACGTCACCTCTGGATAAAATGTAGCAAGAACATAGTTTTGCATTGGCCTGACAGgCGCGCAACAAATGCCTTGGCGAGTCCGAATGGCCGGAGGAAATGAAGACAACAGGGAATTCCGgGTGTGAAGACAGGTGCCAAACGGTGACAACATCTGAAAGGGAATGTGTTTACTTCCAGAGGTGCATATGGGGTCACCGCCAACTCCTCGGTGACAAACAAGCTGCCATGGCGATGGCAAGCAAACAGGGCAGGCCAGCCATGAGTTCATCATTTGGCACCAAAATGGGTGTGAGGACAAGACCCCCATCTCTCCGACTGCGCCGAAAGCGGAGTGGGACAGTGAGCGCGCGCCCCGCCAACCCGCGAGTTCTGAAGAGAGTCAGATAGAACTTATAGACTGAACGTACCGGTTGAAAGAGAGCGAAAATGAGAAAGAGTGACTCACGCTCTCCTCCCTGCTCATCCATCCCATCCGTCGCTCCATCTGGTTTGTATTTGTTTGGATGTTTCTCCACCTCCAGCCTCTGGGTAGAACCAGTGCCAAGCCCACCGCGGAGAGGGTACACTGGGTTGGAGAATGCCTGGGCCTGCCTCTTGGCTGGGGTATGGATGGTGGGCTATGGTGGGGAAGGGAAGGGTGGACTTGGCTGGTGATGGGACTCGGATGGACCGCACTCCGGCGATGACGCGGACATCCATCGATCATCCTTCGCATTGGTTGATAGTTTATCCCCTCTGCGCTGAGGACGGGAACCCAGTGGTGTTGAAGGGGGTGTTGGGGCGCATTGAGGCGTGCTCAGTTGACAGTCCGAGACGTCAGAGAGGACGTCACACAGTGGGCTGGCCGGTGCCAGGACTGACAGACTGGCCAGACGTCTGTGAGATCAGTTTCTGAGACTGGCATCTCATAGGACTGGCATCAGTACCAGGCTGGTAGACTCAGCTTGTCAGATAGGATGAGAAACTGTTTTGGACTCGAAATCTGAATACCATGTCTAAATGTAGTGGTTTttagttatatattttttattattattattgtttgacctttatttgaccagggaAGACATATACAGTACAAATATAAGCATTATACACAATGTATACATCTAAACACATTATATCATGCTGTATGGAGGACATGATTTGTTTTTGCAGTCCCAGCCTTATTGCCTTTGTTTAGTTTATTCCTCGTAGCTGTCTAAATAAAAGAGGCCTAAGCAGAA
>TU1908415
TTTGTTTGTGGGTGGGGACTACATATCCCATCGGTCACTGCCCAAATTCTTTGGGTTAGCAGCTCTCAACATGGCTCAGTTATGTGCTGGCTTTTACCGCGTGATACGCGACTTTTTGGAAATGCAAAGATGCGTGAGAAACTAGTGCGCGGCTGCACTGCAAACCGCTGGATCGCGCTATACAGTCGAACAAGGCAACGCAAAGAACAGACTGGACTACGCGAGAACATTTCATCCAAATCTGGATTTATTCTGTGTTAAGTGGATTTGATAAATTAAGCAGTTTTCGCAGTCGTGCTCTTTGGTTCATTGACTATTGGATCTCATGGGATAGCCTATCCCTTGTCCCACGGTCAGATGTGTGTGCGTTGTGGAGAGCTTTGTATGGAGTTGTGTTCAGTTGAggatgattttttatttttttacttgtgcgtGGGGTTCTTCATTTAGATTTCGACGCCCATATATTTTTACGCATCGTGCTTATGAATATTTATATCCCGTGTCATATCCATAGTCTACAGTTGCCCTGGAGTTGGGCTTTCAGAACCCATCACCATCAGTTACACAGGTGGATGTCACATAACGGCCCTGTGCGTGATGTAAGAAGAAACTGGATTTTGGATTGTAAAACGTCACCTCTGGATAAAATGTAGCAAGAACATAGTTTTGCATTGGCCTGACAGcgtcggtccttacaGAATGCAGCAGCCATCACACAAAGCATTGGGGAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1908414 False 1858 TUCP 0.48 5 15339685 15415178
TU1908415 True 735 lncRNA 0.45 2 15412404 15415178

Neighbor

gene id symbol gene type direction distance location
LOC110499043 NA coding downstream 509348 14899047 ~ 14903056 (-)
vstm4b cj072 coding downstream 548692 14856302 ~ 14863712 (-)
LOC110499039 LOC106589224 coding downstream 566992 14843483 ~ 14845412 (-)
LOC110499037 LOC106589345 coding downstream 595646 14774458 ~ 14816758 (-)
LOC110498748 LOC106589347 coding downstream 655256 14708549 ~ 14757148 (-)
LOC110498749 s39ab coding upstream 6115 15421293 ~ 15577049 (-)
LOC110499047 NA coding upstream 180969 15596147 ~ 15607535 (-)
LOC110498751 LOC106589337 coding upstream 221222 15636400 ~ 15680564 (-)
LOC110499049 cops3 coding upstream 281194 15696372 ~ 15707560 (-)
LOC110499050 LOC106589334 coding upstream 341481 15756659 ~ 15758251 (-)
G1667941 NA non-coding downstream 88516 15323655 ~ 15323888 (-)
G1667938 NA non-coding downstream 90641 15321538 ~ 15321763 (-)
G1667572 NA non-coding downstream 116377 15294521 ~ 15296027 (-)
G1667398 NA non-coding downstream 270508 15141679 ~ 15141896 (-)
G1667339 NA non-coding downstream 271682 15066800 ~ 15140722 (-)
G1667922 NA non-coding upstream 194536 15609714 ~ 15619443 (-)
G1668553 NA non-coding upstream 591020 16006198 ~ 16075051 (-)
G1668590 NA non-coding upstream 647695 16062873 ~ 16063197 (-)
G1668606 LOC106589333 non-coding upstream 669023 16084201 ~ 16085870 (-)
G1667100 LOC106589344 other downstream 514723 14890375 ~ 14897681 (-)
LOC110499033 LOC107708254 other downstream 777964 14616546 ~ 14647860 (-)
G1666788 NA other downstream 987090 14424973 ~ 14425314 (-)
G1666656 LOC106589183 other downstream 1189385 14222199 ~ 14223019 (-)
G1665402 LOC106589366 other downstream 2005027 13401281 ~ 13407377 (-)
G1668767 NA other upstream 922098 16337276 ~ 16337734 (-)
LOC110499060 LOC106589322 other upstream 1132170 16547347 ~ 16560741 (-)
G1669343 LOC106589306 other upstream 1338848 16754026 ~ 16795255 (-)

Expression


Co-expression Network