G1670094


Basic Information

Item Value
gene id G1670094
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 17580653 ~ 17605720 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1910787
gaccgggagctaggcttttgggcagataatcatactagtgtatgagcaaaatgtctgcactgatattcctaaattttggcccattccacctgacagctggtgtaactgagtcaggtttgtcggcctctttgctcgcacacgctttttcagttctgcccacaaatgttctataggattgaggtcagggctctgtgatgacaactccaataccttgactttgttgtccttatgccatttttccacaactttttcggtccgagaaccttctagagccacgtacctcaccacgcactatcgacctgaggtctaGACCATGCCACCTGGTTGTTTGGTCCATCGCCTACTCGCttatattttattttcatatcTCTTACTAAACTCTCAAACGATTAACAGTTGGTTGAGCTGTATAATATAGGGCTAGCCCTGCTTTAGGCCTCTAGGGTGTGTGCTGTTGAAAGTTAGCATGCTTTCTGGGTGACTTGGTAATGCACATAACATGAACACCGGCTTGCCTATGGAGAAGTAGTCTTGGTCGGTAAACCTGCATCCCTCAATGGAGTGTAAGCCTTGAACGATCCACCGTCATGTACATTACAAAACCAAAGTATTGTGTGAGGTTTTATTTACACATTTAATCTAGTTTCCGACCTTAATCCCCTTCCAAAGTTGTGTAGCCTATTATGGTGTGTACTCTGTGGCTGTTCAAGATAAGGGGGCACGGTTTAACTAGCTGAATGTTAGTGTTGATTTGCcactgcctttttttttttttttaggatccCAATTATCTGTTGCAaaagcaacagctactcttcctgatgtCCTTTCTCATCCCCTCTGTCATTGGACGAAACGATCATGTTAACTTTATTTTCATCCATTTAGATTTCAAGAAAttacaaatgtgttattttaaaatgtttcaaAATAAAGGAAAAGGCAATAAACAGTCCTACTTTTGAAGGGGTTAATTGCTTTAAAATGTGAGTCTTAAATGCATCTTTTGCGAGGGACCATGAAGGCAGTGTATTTTATCTGGGAAAATAGTGTCTGATTTGCACGTTATGTCTAGATTATTGCTACCAGTAGCCATTTTTCTTTGTCCTCAATGTTCTGTGACAGGCATGTTTGTACTTCGTTTTATTTAAATGTGAATTAAAAATGCTTCTTAGTTTATTAAAACCAAGCATGTCTAACTTTTCATTGTGGCTATTTATTATCACTAAGTGATGCATGTAGCAGCTGTGCTGGTCGACACACATTGGTGTGAAGGATTTAGTATTATCCAAATATATCAAATAGTATATAGGTTAACTGAGCATATACAGTTAGTGGATAAATTATTTTGTGTGGGAATATACAGtggcaaaaaaaagtatgtgaaccctttggaattacctgcatttctgcataaattggtcatacaattttatgtgatcttcatctaagtcacaacaatagacaaaacaaacaattatatgttatgtctttattgaacacaccatgtGAACCCTTGTATTTAATAACAAGTgaaccctcctttggcagcaattaaccTCAACcgaatgttttctgtagttgcggatcagaccttcaaaggtcaggaggaattttggaccatacACTTTTaccaaactgtttcagttcaacaaTATTTGTAGGATGCCTGGTGTGAACCACTCTCGGGTTCATGTCACAGCATTTTAAATCTGCTTAAAGTCGGGACTGGGCcatcttctgttgaagccattctgttg
>TU1910786
acaAATTAGAGACTACGTTAGAAAACACCTCCCAACATTTGGGAATGCTAAACCTTCCATGTTTGACAGATGCATAAAAATATGCCCCACCTCAGATAAACTGATATTGATATATGATGCTTTTCAATCTGTTAGCACACCTTCTACAGatgccatcaaggcaaaatgggaggaagaactagggACTGACATTTCTGTGGCAGACTGGGAAGAGAGCTTGGAGTATATCCACACATGCTCCATTAATTCCAGACATCGTCTCATACAATTCAAGGTCATTACCTGGACCAGAAGAGGCTAAAACAGGGCCTGTACCGCCACCCATGGGATGACATCTCCTATGTGCTTCCTGAACACATGTCAATGTAACTGATGACAGCGAGTCGGCACCTCTGGATGTCAACACTCGGATATGACGGGAAGCATTTTCACCTTATCACTTCAACAACCTCTGCCTTTGGGCAGGGTAAATCCAGAGGTGGGGGGGATATGGGGGAAGAGGGGAGCGTTAGTTTTATTAGGTCACTAAAGAAAAAGGGAATAATTTACGTTATTTAAGTTATGAGTTCAATCGTTAACAAAAAAAAGGAGCCGAACCAATGCAAGCTGCAGCTGTGGTCACACTAGGTGACTGGGAAAACTAGGTCACCGGTTCACAAATGGGATAGTGGCTTTTTGACCATGCCACCTGGTTGTTTGGTCCATCGCCTACTCGCttatattttattttcatatcTCTTACTAAACTCTCAAACGATTAACAGTTGGTTGAGCTGTATAATATAGGGCTAGCCCTGCTTTAGGCCTCTAGGGTGTGTGCTGTTGAAAGTTAGCATGCTTTCTGGGTGACTTGGTAATGCACATAACATGAACACTGGCTTGCCTATGGAGAAGTAGTCTTGGTCGGTAAACCTGCATCCCTCAATGGAGTGTAAGCCTTGAACGATCCACCGTCATGTACATTACAAAACCAAAGTATTGTGTGAGGTTTTATTTACACATTTAATCTAGTTTCCGACCTTAATCCCCTTCCAAAGTTGTGTAGCCTATTATGGTGTGTACTCTGTGGCTGTTCAAGATAAGGGGGCACGGTTTAACTAGCTGAATGTTAGTGTTGATTTGCcactgcctttttttttttttttaggatccCAATTATCTGTTGCAaaagcaacagctactcttcctgatgtCCTTTCTCATCCCCTCTGTTAACTTTATTTTCATCCATTTAGATTTCAAGAAAttacaaatgtgttattttaaaatgtttcaaAATAAAGGAAAAGGCAATAAACAGTCCTACTTTTGAAGGGGTTAATTGCTTTAAAATGTGAGTCTTAAATGCATCTTTTGCGAGGGACCATGAAGGCAGTGTATTTTATCTGGGAAAATAGTGTCTGATTTGCACGTTATGTCTAGATTATTGCTACCAGTAGCAGTAGCCATTTTTCTTTGTCCTCAATGTTCTGTGACAGGCATGTTTGTACTTCGTTTTATTTAAATGTGAATTAAAAATGCTTCTTAGTTTATTAAAACCAAGCATGTCTAACTTTTCATTGTGGCTATTTATTATCACTAAGTGATGCATGTAGCAGCTGTGCTGGTCGACACACATTGGTGTGAAGGATTTAGTATTATCCAAATATATCAAATAGTATATAGGTTAACTGAGCATATACAGTTAGTGGATAAATTATTTTGTGTGGGAATATACAGtggcaaaaaaaagtatgtgaaccctttggaattacctgcatttctgcataaattggtcatacaattttatgtgatcttcatctaagtcacaacaatagacaaaacaaacaattatatgttatgtctttattgaacacaccatgtGAACCCTTGTATTTAATAACAAGTgaaccctcctttggcagcaattaaccTCAACcgaatgttttctgtagttgcggatcagaccttcaaaggtcaggaggaattttggaccatacACTTTTaccaaactgtttcagttcaacaaTATTTGTAGGATGCCTGGTGTGAACCACTCTCGGGTTCATGTCACAGCATTTTAAATCTGCTTAAAGTCGGGACTGGGCcatcttctgttgaagccattctgttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1910787 False 1760 lncRNA 0.39 2 17580653 17605720
TU1910786 True 2113 lncRNA 0.39 4 17584171 17605720

Neighbor

gene id symbol gene type direction distance location
LOC118942042 LOC105021261 coding upstream 84912 17484324 ~ 17495741 (+)
LOC118941996 LOC105021261 coding upstream 100722 17476413 ~ 17479931 (+)
LOC110515779 LOC105021261 coding upstream 107766 17469369 ~ 17472887 (+)
LOC118942008 LOC105021261 coding upstream 115672 17461437 ~ 17464981 (+)
LOC118941995 LOC105021261 coding upstream 123610 17453487 ~ 17457043 (+)
LOC118942045 NA coding downstream 4693 17607281 ~ 17615450 (+)
LOC118942046 NA coding downstream 232373 17838093 ~ 17843090 (+)
LOC110499153 LOC106589263 coding downstream 1489162 19094882 ~ 19201695 (+)
LOC110499151 LOC106589264 coding downstream 1601532 19207252 ~ 19242695 (+)
LOC110499149 LOC106589267 coding downstream 1689403 19295123 ~ 19303669 (+)
G1670088 NA non-coding upstream 9000 17571382 ~ 17571653 (+)
G1670086 NA non-coding upstream 18971 17557055 ~ 17561682 (+)
G1670085 NA non-coding upstream 38185 17542213 ~ 17542468 (+)
G1669683 NA non-coding upstream 193733 17328520 ~ 17386920 (+)
G1669755 NA non-coding upstream 212966 17359796 ~ 17367687 (+)
G1670114 NA non-coding downstream 80204 17685924 ~ 17691465 (+)
G1670116 NA non-coding downstream 82317 17688037 ~ 17693706 (+)
G1670123 NA non-coding downstream 108828 17714548 ~ 17714916 (+)
G1670125 LOC105007702 non-coding downstream 111316 17717036 ~ 17812707 (+)
G1670091 NA other upstream 3391 17572831 ~ 17577262 (+)
LOC110498756 LOC106589319 other upstream 894558 16657491 ~ 16706241 (+)
LOC110498755 LOC106589324 other upstream 1040216 16535724 ~ 16540437 (+)
LOC110499058 LOC106589328 other upstream 1274432 16140837 ~ 16306628 (+)
G1670129 NA other downstream 146574 17752294 ~ 17760812 (+)
G1670126 NA other downstream 161761 17767481 ~ 17773702 (+)
G1670209 LOC105007702 other downstream 445891 18051611 ~ 18132470 (+)

Expression


Co-expression Network