G1670141


Basic Information

Item Value
gene id G1670141
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 17747848 ~ 17764965 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1910882
attctacaaattatacctccattctgtcctttagtagtgtttttgtagaaattgccacaaaagtcatattaaatcatgttaatcaccaatgttggaaatctgactaaaaggatattttctgagtaaagtacacaaaatcgtgtagtagttttatggtagaaatattctcatgttcacgaaaagtggttgaaaacctttggaagttatgttgttttttccccccttttcccccatgaactgtaaatcagtcatttctcccaacagatgtcaaagaaaagctctctcacacacacacacacacacacacacacacacagcaaggatggagtgacaaagtgcggtgcttaaagacacacagagcctgcaatggcatttccatattctctaggccgttccgagttcaaggagatgccccgcttgaccgtagctcgctctgagtgcagcgaccgtgaaaaaagtaggcccaaaatgaagcctggccctaaatgtcatttgcttttgggtgacagtgagagaaccgttagggtgagaagcacaattcgacatcaggtacgttcctgaggtcctcccgatctgtgcaagcctaaccttgaccgcgtggcattaacccttaacagtaaaacagttttttttttgatctcacagattacaacgacatctctccccataggaatacattgcctgctcctctaaagtcaacctgaagcctatgtgggttatgaatgccttatgaacctgtcttcaatgacagtccatcaggatactatgaggtctacctgtgtcgattctaagcttcctgaagcaaccggaagtggttaaaatcaccctaaacgtgtttttccatacccaaccagcagcttgtgataaatagtgcattcaaccctgtgtaaatcggtcagttcttaacataaacacttaaaactcaggattctataaaggcataccccaatgaggatatgtgtttacctatagcttcctgtgccaaccggaagtgccataattggtgtcacaggggatgtttcaaagggttaaaaaagtcagatctttccaaaacttcatgtgtgtgattaggcaacccccatgaactgtaaatcagtcatttttcccataacatttcaaagaaaaactaaatcacacacaagcacagcttggaaggagggacacattggggtgcgtagagacatacactgagatatacattagttagctttgttcgagctaaaaaagaaccgtcagaactggagttacgaaactttagaaaccggttctagaccccaggtcgatagtgcgtggtgaggtacgtggctctagaaggttctcggaccgaaaaagttgtgggaaaatggcgtaaggacaacaaagtcaaggtattggagttgtcatcacagagccctgacctcaatcctatagaaaatgtgtgggcagaactgaaaaagcgtgtgcgagcaaagaggccgacaaacctgactccgttacaccagctgtcaggtggaatgggccaaaatgtaggaatatcagtgcagacattttgcccaaaagcctagctcccggtccctccctcacctctccttctctgctaggataagtttggtgagatatgcatgcagcttgttctcctggttgatgcgcttctcctcaatgctattccagcgcttcttcttagcgacccgcagggcactcgggatgtcgtctccaaagttcagtctctgctccttgaccagattgtaagctgccgacagaaaaggtccagacatgaatgtaatactgcct

Function

NR:

description
STIP1 homology and U box-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1910882 True 1770 lncRNA 0.44 3 17747848 17764965

Neighbor

gene id symbol gene type direction distance location
LOC110498760 stub1 coding downstream 295127 17442590 ~ 17452727 (-)
LOC110498759 NA coding downstream 316792 17428615 ~ 17434040 (-)
LOC110499078 LOC106578245 coding downstream 373533 17367169 ~ 17374315 (-)
LOC118942007 LOC106578245 coding downstream 385250 17359654 ~ 17362598 (-)
LOC118942041 LOC106611593 coding downstream 397388 17346166 ~ 17350460 (-)
LOC110512504 NA coding upstream 608810 18373775 ~ 18381647 (-)
LOC118942047 NA coding upstream 618900 18383865 ~ 18384458 (-)
LOC110498770 LOC106589258 coding upstream 989129 18754094 ~ 18887492 (-)
LOC110499157 LOC106589261 coding upstream 1125105 18890070 ~ 19003867 (-)
LOC110499154 LOC106589262 coding upstream 1289161 19054126 ~ 19095333 (-)
G1670139 LOC105007702 non-coding downstream 36581 17699374 ~ 17711267 (-)
G1670112 NA non-coding downstream 99214 17648360 ~ 17648634 (-)
G1670104 NA non-coding downstream 139947 17588241 ~ 17607901 (-)
G1670090 NA non-coding downstream 175528 17571928 ~ 17572320 (-)
G1670089 NA non-coding downstream 176092 17571417 ~ 17571756 (-)
G1670144 stub1 non-coding upstream 3373 17768338 ~ 17775909 (-)
G1670153 NA non-coding upstream 5742 17770707 ~ 17777837 (-)
G1670166 NA non-coding upstream 58873 17823838 ~ 17856746 (-)
G1670172 NA non-coding upstream 123309 17888274 ~ 17896403 (-)
G1671479 NA non-coding upstream 260837 18025802 ~ 18031219 (-)
G1670142 NA other downstream 53264 17687735 ~ 17694584 (-)
G1670145 NA other downstream 55982 17685976 ~ 17691866 (-)
G1670109 LOC105007702 other downstream 122400 17596615 ~ 17625448 (-)
G1671478 NA other upstream 257479 18022444 ~ 18032842 (-)
G1671549 NA other upstream 635387 18400352 ~ 18406596 (-)
G1671550 NA other upstream 644159 18409124 ~ 18415464 (-)
G1671578 NA other upstream 800905 18565870 ~ 18624587 (-)
G1671580 NA other upstream 829088 18594053 ~ 18642884 (-)

Expression


Co-expression Network