G1670209 (LOC105007702)


Basic Information

Item Value
gene id G1670209
gene name LOC105007702
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18051611 ~ 18132470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1910974
atagggaaacagtgcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccaactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacccccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcactaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacccccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcactaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacctccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaagaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgc
>TU1910976
atagggaaacagtgcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccaactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacccccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcactaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataaaccgtgtGTAtacttgccaacagaaccgtaacccctcagtggcggtgtactacaccaaccgtactctgtgccaagtgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacccccattctgtca
>TU1910970
actggacctccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaagaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgcta
>TU1910971
actggacctccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaagaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgc
>TU1910972
actggacctccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagttggatgtcttgctcccaggcagactaaatgacttttttgcccgctttgaggacaatacagtgccactgacacggcctgctacgaaaacatgcggtctctccttcactgcagccgaggtgagtaagacatttaaacgtgttaaccctcgcaaggctgcaggcccagacggcatccccagccgcgccctcagagcatgcgcagaccagctggccggtgtgtttacggacatattcaatcaatccctataccagtctgctgttcccacatgcttcaagagggccaccattgttcctgttcccaagaaagctaaggtaactgagctaaacgactaccgccccgtagcactcacatccgtcatcatgaagtgcttggagagactagtcaaggaccatatcacctccaccctacctgacaccctagacccactccaatttgcttaccgcccaaataggtccacagacgatgcaatctcaaccatactgcacactgccctaacccatctggacaagaggaatacctatgtgagaatgctgttcatcgactacagctcggcattcaacaccatagtaccctccaagctcgtcatcaagctcgagaccctgggtctcgaccccgccctgtgcaactgggtactggacttcctgacgggccgcccccaggtggtgagggtaggcaacaacatctcctccccgctgatcctcaacactggggccccacaagggtgcgttctgagccctctcctgtactccctgttcacccacga
>TU1910975
actggacctccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaagaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccatagtgagtagcaagctactgctcttaaggggaatgatgatgtaaaatgtctacaccttttcagatgactgaaagtctatatgatatgagatattgacactgtcctattcacctactctgaatagatgtcagaatagaagtagcttggtctgatgcactcttacaaaaatagcttgtgcaatatgtaggcctaacgtgcgtggttgcacctgtgtgtgtgtatacatcttgccaacagaaccgtgtGTAtac
>TU1910977
agcaatagccacatggccgtgacggcgtttacagaggaagcaaataaaggtaaaccaaacttaggttaggttattgaagggaactaatagtaaattggcagttgaataagtgttattattatgcctactcacagtcgatactgatagtggttaatatttaacatgatagaaataggagacaaagtcggggtagcctataattaagacattcaggagtgtccatccctgcaagttaaaaggccgtacaataaaattctgcataatggcacggcatgtcccagtgtgtaatcttggtttcatcagcccagaaaatattgtttctcatgtctgagaggccttcaagttgtagaactacctcaaggatgatcaatggaaacatgatgcacagctcaatttccagtatcatagcaaatggtctgaatacttatgtaaataaggtatttctgtttttgcaaacatttctaaacctgtttttgttgtgtcattatggggtgttgtgtgtagattgaggggaaaaatgtattaatatattgttagttacgctgtaacataacaatgtggaaaaagtgaaggggtctgaatactttctgaatgcactgtagatgtgcagtattgggtcgagtgcaatttataatgctgtcaacattctaactatacccagtactaggcatctctgaggcagtattacattcatgtctggaccttttctgtcggcagcttacaatctggtcaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgcagcgggcgctgcagagccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccaactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccatagtgagtagcaagctactgctcttaaggggaat

Function

NR:

description
STIP1 homology and U box-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1910974 False 1923 TUCP 0.55 10 18051611 18121167
TU1910976 False 895 TUCP 0.55 5 18051611 18110223
TU1910970 False 478 lncRNA 0.55 3 18075100 18132470
TU1910971 False 476 lncRNA 0.55 3 18075100 18121167
TU1910972 False 859 TUCP 0.55 2 18075100 18095418
TU1910975 False 740 lncRNA 0.50 3 18075100 18115759
TU1910977 True 1145 lncRNA 0.44 2 18077997 18082465

Neighbor

gene id symbol gene type direction distance location
LOC118942046 NA coding upstream 232010 17838093 ~ 17843090 (+)
LOC118942045 NA coding upstream 459650 17607281 ~ 17615450 (+)
LOC118942044 NA coding upstream 469934 17600129 ~ 17605166 (+)
LOC118942043 NA coding upstream 487913 17580590 ~ 17587187 (+)
LOC118942042 LOC105021261 coding upstream 579359 17484324 ~ 17495741 (+)
LOC110499153 LOC106589263 coding downstream 962412 19094882 ~ 19201695 (+)
LOC110499151 LOC106589264 coding downstream 1074782 19207252 ~ 19242695 (+)
LOC110499149 LOC106589267 coding downstream 1162653 19295123 ~ 19303669 (+)
LOC110499145 LOC106589268 coding downstream 1178900 19311370 ~ 19350990 (+)
LOC118942048 NA coding downstream 1243769 19376239 ~ 19378591 (+)
G1670208 NA non-coding upstream 24481 18050062 ~ 18050619 (+)
G1670174 NA non-coding upstream 68641 18006245 ~ 18006459 (+)
G1670159 NA non-coding upstream 242049 17828766 ~ 17833051 (+)
G1670158 NA non-coding upstream 258608 17816179 ~ 17816492 (+)
G1670127 NA non-coding upstream 318691 17748210 ~ 17756409 (+)
G1670233 LOC105021261 non-coding downstream 31314 18163784 ~ 18223302 (+)
G1670231 NA non-coding downstream 61026 18193496 ~ 18200773 (+)
G1670235 NA non-coding downstream 62839 18195309 ~ 18200160 (+)
G1670229 NA non-coding downstream 63665 18196135 ~ 18202995 (+)
G1670238 LOC105021261 non-coding downstream 74323 18206793 ~ 18214411 (+)
G1670125 LOC105007702 other upstream 295726 17717036 ~ 17812707 (+)
G1670126 NA other upstream 301398 17767481 ~ 17773702 (+)
G1670129 NA other upstream 314288 17752294 ~ 17760812 (+)
G1670091 NA other upstream 497838 17572831 ~ 17577262 (+)
LOC118941995 LOC105021261 other upstream 621006 17453487 ~ 17457043 (+)
G1671091 NA other downstream 2095325 20227795 ~ 20228168 (+)
G1672918 NA other downstream 2956933 21089403 ~ 21089830 (+)
G1672973 NA other downstream 3008055 21140525 ~ 21191078 (+)
G1673044 NA other downstream 3163902 21296372 ~ 21296854 (+)

Expression


Co-expression Network