G1671508


Basic Information

Item Value
gene id G1671508
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18135336 ~ 18210163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1912441
gttggaaatctgactaaaaggatattttctgagtaaagtacacaaaatcgtgtagtagttttatggtagaaatattctcatgttcacgaaaagtggttgaaaacctttggaagttatgttgttttttccccccatgaactgtaaatcagtcatttctcccaacagatgtcaaagaaaagctctctcacacacacacacacacacacacagcaaggatggagtgacaaagtgcggtgcttaaagacacacagagcctgcaatggcatttccatattctctaggccgttccgagttcaaggagatgccccgcttgaccgtagctcgctctgagtgcagcgaccgtgaaaaaagtaggcccaaaatgaagcctggccctaaatgtcatttgcttttgggtgacagtgagagaaccgttagggtgagaagcacaattcgacatcAGGTAcgctcctgaggtcctcccgatctgtgcaagcctaaccttgaccgcgtggcattaacccttaacagtaaaacagtttttttttgatctcacagattacaacgacatctctccccataggaatacattgcctgctcctctaaagtcaacctgaagcctatgtgggttatgaatgccttatgaacctgtcttcaatgacagtccatcaggacactatgaggtctacctgtgtcgattctaagcttcctgaagcaaccggaagtggttaaaatcaccctaaacgtgtttttccatacccaaccagcagcttgtgataaatagtgc
>TU1912428
gtctgttgacaaaaaccaaagtgaaaaggtgtactgtatttaaagggatgacttattaagacaaatgtactgaaaaccctattgaataaaaactccacgagaacatctgttggccagccagtgggaaggtttctagcagttcaattacacttatttggcgtgcgcaagtgaaccacgcctacaaagcctgttacgcaccttaataaggttactctgaataccaactactaaaaagtatataggaaaggcgtaatttcctaaatcggacccttagtgaatacaggcccaaacttaatctgtgtctaggaaactggccttgagggttggtcctgacctctctgcaggttgccgatggcctcgttgtagttctccagctccaggtgacactggcacaggaagaagtgggctttgacagaatgggggtccagttccagcgcgtgcttgcagtccgccagggctttgtcgttctgcttgcagcttcacttggcacagagtacggttggtgtagtacaccgccactgaggggttacggttctgttggcaagatgtatacacacacacacacaggtgcaaccacgcccgttacatattgcacaagctatttttgt
>TU1912433
gtctgttgacaaaaaccaaagtgaaaaggtgtactgtatttaaagggatgacttattaagacaaatgtactgaaaaccctattgaataaaaactccacgagaacatctgttggccagccagtgggaaggtttctagcagttcaattacacttatttggcgtgcgcaagtgaaccacgcctacaaagcctgttacgcaccttaataaggttactctgaataccaactactaaaaagtatataggaaaggcgtaatttcctaaatcggacccttagtgaatacaggcccaaacttaatctgtgtctaggaaactggccttgagggttggtcctgacctctctgcaggttgccgatggcctcgttgtagttctccagctccaggtgacactggcacaggaagaagtgggctttgacagaatgggggtccagttccagcgcgtgcttgcagtccgccagggctttgtcgttctgcttgcagcttcacttggcacagagtacggttggtgtaggacaccgccactgaggggttacggttctgttggcaagatgtatacacacacacacacaggtgcaaccacgcacgttacatattgcacaagctatttttgtaagagtgcatcagaccaagctacttctattctgacatctattcagagtaggtgaataggacagtgtcaatatctcatatcat
>TU1912423
gtctgttgacaaaaaccaaagtgaaaaggtgtactgtatttaaagggatgacttattaagacaaatgtactgaaaaccctattgaataaaaactccacgagaacatctgttggccagccagtgggaaggtttctagcagttcaattacacttatttggcgtgcgcaagtgaaccacgcctacaaagcctgttacgcaccttaataaggttactctgaataccaactactaaaaagtatataggaaaggcgtaatttcctaaatcggacccttagtgaatacaggcccaaacttaatctgtgtctaggaaactggccttgagggttggtcctgacctctctgcaggttgccgatggcctcgttgtagttctccagctccaggtgacactggcacaggaagaagtgggctttgacagaatgggggtccagttccagcgcgtgcttgcagtccgccagggctttgtcgttctgcttgcagcttcacttggcacagagtacggttggtgtagtacaccgccactgaggggttacggttctgttggcaagatgtatacacacacacacacaggtgcaaccacgcacgttacatattgcacaagctatttttgtaagagtgcatcagaccaagctacttctattctgacatctattcagagtaggtgaataggacagtgtcaatatctcatatcatatagactttcagtcatctgaaaaggtgtagacattttacatcatcattccccttaagagcagtag
>TU1912440
acattgcctgctcctctaaagtcaacctgaagcctatgtgggttatgaatgccttatgaacctgtcttcaatgacagtccatcaggatactatgaggtctacctgtgtcgattctaagcttcctgaagcaaccggaagtggttaaaatcaccctaaacgtgtttttccatacccaaccagcagcttgtgataaatagtgcattcaaccctgtgtaaatcggtcagttcttaacataaacacttaaaactcaggattctgtaaaggcacaccccaatgaggatatgtgtttacctatagcttcctgtgccaaccggaagtgccataattggtgtcacaggggatgtttcaaagggttaaaaaagtcagatctttccaaaacttcatgtgtgtgattaggcaacccccatgaactgtaaatcagtcatttttcccataaaatttcaaagaaaaactaaatcacacacaagcacagcttggaaggagggacacattggggtgcgtagagacatacactgagatatacattagttagctttgttcgagctaaaaaagaactgtcagaactagagttacgaaactttagaaacctgttctagaccccaggtcgatagtgcgtggtgaggtacgtggctctagaaggttctcggaccgaaaaagttgtgggaaaatggcgtaaggacaacaaagtcaaggtattggagttgtcatcacagagccctgacctcaatcctatagaaaatgtgtgggcagaactgaaaaagcgtgtgcgagcaaagaggccgacaaacctgactcagttacaccagctgtcaggtggaatgggccaaaatgtaggaatatcagtgcagacattttgctcatacactagtatgattatctgcccaaaagcctagctcccggtccctccctcacctctccttctctgctaggataagtttggtgagatatgcatgcagcttgttctcctggttgatgcgcttctcctcaatgctattccagcgcttcctcttagcgacccgcagggcactcgggatgtcgtctccaaagttcagtctctgctccttggccagattgtaagctgccgacagaaaaggtccagacatgaatgtaatactgcctcagagatgcctagtactgggtatagttagaatgttgacagcattataaattgcaactgcacatctacagtgcattcagaaagtattcagaccccttcactttttccacattgttatgttacagcgtaactaacaatatattaatacatttttcccctcaatctacacacaacaccccataatgacacaacaaaaacaggtttagaaatgtttgcaaaaacagaaataccttatttacataagtattcagaccatactggaaattgagctgaggtgcatcctgtttccattgatcatccttgaggtagttctacaacttgaaggcctctcagacatgagaaacaatattttctgggctgatgaaaccaagattacacactattattttatgattcataaatactttcctaaccctaaatgtaaaaaaaatactctgatcttgtaggtacaagatcagagtattttttaaaaatctaccaactggtgttgaaacggagacaaatatgcatatatttagatatctttccttcattgatccataatattctgaacccgttctctcaatatattctattgagtctgttgacaaaaaccaaagtgaaaaggtgtactgtatttaaagggatgacttattaagacaaatgtactgaaaaccctattgaataaaaactccacgagaacatctgttggccagccagtgggaaggtttctaacagttcaattacacttatttggagtgcgcaagtgaaccacgcctacaaagcctgttacgcaccttaataaggttactctgaataccaactactaaaaagtatataggaaaggcgtaatttcctaaatcggacccttagtgaatacaggcccaaacttaatctgtgtctaggaaactggccttgagggttggtcctgacctctctgcaggttgccgatggcctcgttgtagttctccagctccaggtgacactggcacaggaagaagtgggctttgacagaatgggggtccagttccagcgcgtgcttgcagtccgccagggctttgtcgttctgcttgcagcttcacttggcacagagtacggttggtgtagtacaccgccactgaggggttacggttctgttggcaagatgtatacacacacacacaggtgcaaccacgcacgttacatattgcacaagctatttttgtaagagtgcatcagaccaagctacttctattctgacatctattcagagtaggtgaataggacagtgtcaatatctcatatcatatagactttcagtcatctgaaaaggtgtagacattttacatcatcattccccttaagagcagtag
>TU1912430
agtgtttctgtagaaattgccacaaaagtcatattaaatcatgttaatcaccaatgttggaaatctgactaaaaggatattttctgagtaaagtacacaaaatcgtgtagtagttttatggtagaaatattctcatgttcacgaaaagtggttgaaaacctttggaagttatgttgttttttccccccatgaactgtaaatcagtcatttctcccaacagatgtcaaagaaaagctctctcacacacacacacacacacacacacagcaaggatggagtgacaaagtgcggtgcttaaagacacacagagcctgcaatggcatttccatattctctaggccgttccgagttcaaggagatgccccgcttgaccgtagctcgctctgagtgcagcgaccgtgaaaaaagtaggcccaaaatgaagcctggccctaaatgtcatttgcttttgggtgacagtgagagaaccgttagggtgagaagcacaattcgacctcaggtacgttcctgaggtcctcccgatctgtgcaagcctaaccttgaccgcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1912441 False 766 lncRNA 0.44 2 18135336 18191454
TU1912428 False 608 lncRNA 0.47 2 18176745 18201642
TU1912433 False 690 lncRNA 0.46 2 18187926 18201642
TU1912423 False 755 lncRNA 0.45 2 18193488 18201642
TU1912440 False 2449 lncRNA 0.42 2 18193488 18203909
TU1912430 True 548 lncRNA 0.44 2 18203987 18210163

Neighbor

gene id symbol gene type direction distance location
LOC110498760 stub1 coding downstream 682615 17442590 ~ 17452727 (-)
LOC110498759 NA coding downstream 704280 17428615 ~ 17434040 (-)
LOC110499078 LOC106578245 coding downstream 761021 17367169 ~ 17374315 (-)
LOC118942007 LOC106578245 coding downstream 772738 17359654 ~ 17362598 (-)
LOC118942041 LOC106611593 coding downstream 784876 17346166 ~ 17350460 (-)
LOC110512504 NA coding upstream 163612 18373775 ~ 18381647 (-)
LOC118942047 NA coding upstream 173702 18383865 ~ 18384458 (-)
LOC110498770 LOC106589258 coding upstream 543931 18754094 ~ 18887492 (-)
LOC110499157 LOC106589261 coding upstream 679907 18890070 ~ 19003867 (-)
LOC110499154 LOC106589262 coding upstream 843963 19054126 ~ 19095333 (-)
G1671505 NA non-coding downstream 6393 18122259 ~ 18128943 (-)
G1671504 NA non-coding downstream 13778 18115654 ~ 18121558 (-)
G1671499 NA non-coding downstream 31479 18095514 ~ 18103857 (-)
G1671498 NA non-coding downstream 32252 18094686 ~ 18103084 (-)
G1671493 NA non-coding downstream 43959 18085103 ~ 18091377 (-)
G1671526 NA non-coding upstream 5073 18215236 ~ 18221419 (-)
G1671531 NA non-coding upstream 110944 18321107 ~ 18324604 (-)
G1671538 NA non-coding upstream 121825 18331988 ~ 18332237 (-)
G1671540 NA non-coding upstream 137168 18347331 ~ 18350834 (-)
G1671541 NA non-coding upstream 140708 18350871 ~ 18369173 (-)
G1671478 NA other downstream 102494 18022444 ~ 18032842 (-)
G1670142 NA other downstream 440752 17687735 ~ 17694584 (-)
G1670145 NA other downstream 443470 17685976 ~ 17691866 (-)
G1670109 LOC105007702 other downstream 509888 17596615 ~ 17625448 (-)
G1671549 NA other upstream 190189 18400352 ~ 18406596 (-)
G1671550 NA other upstream 198961 18409124 ~ 18415464 (-)
G1671578 NA other upstream 355707 18565870 ~ 18624587 (-)
G1671580 NA other upstream 383890 18594053 ~ 18642884 (-)
G1671584 NA other upstream 421344 18631507 ~ 18632087 (-)

Expression


Co-expression Network