G1670238 (LOC105021261)


Basic Information

Item Value
gene id G1670238
gene name LOC105021261
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18206793 ~ 18214411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1911014
gcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacccccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggtcatcggcaacctgcagagagcttacaatctggccaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaggaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagaggtgagggagggaccgggagctaggcttttgggcagataatcatactagtgtatgagcaaaatgtctgcactgatattcctacattttggcccattccacctgacagctggtgtaactgagtcaggtttgtcggcctctttgctcgcacacgcttttt
>TU1911015
tgaagctgcaagcagaacgacaaagccctggcggactgcaagcacgcgctggaactggacccccattctgtcaaagcccacttcttcctgtgccagtgtcacctggagctggagaactacaacgaggtcatcggcaacctgcagagagcttacaatctggccaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaggaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagaggtgagggagggaccgggagctaggcttttgggcagataatcatactagtgtatgagcaaaatgtctgcactgatattcctacattttggcccattccacctgacagctggtgtaactgagtcaggtttgtcggcctctttgctcgcacacgcttttt

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase CHIP

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1911014 False 464 lncRNA 0.53 2 18206793 18214411
TU1911015 True 471 lncRNA 0.53 2 18212415 18214411

Neighbor

gene id symbol gene type direction distance location
LOC118942046 NA coding upstream 363703 17838093 ~ 17843090 (+)
LOC118942045 NA coding upstream 591343 17607281 ~ 17615450 (+)
LOC118942044 NA coding upstream 601627 17600129 ~ 17605166 (+)
LOC118942043 NA coding upstream 619606 17580590 ~ 17587187 (+)
LOC118942042 LOC105021261 coding upstream 711052 17484324 ~ 17495741 (+)
LOC110499153 LOC106589263 coding downstream 880471 19094882 ~ 19201695 (+)
LOC110499151 LOC106589264 coding downstream 992841 19207252 ~ 19242695 (+)
LOC110499149 LOC106589267 coding downstream 1080712 19295123 ~ 19303669 (+)
LOC110499145 LOC106589268 coding downstream 1096959 19311370 ~ 19350990 (+)
LOC118942048 NA coding downstream 1161828 19376239 ~ 19378591 (+)
G1670229 NA non-coding upstream 3798 18196135 ~ 18202995 (+)
G1670231 NA non-coding upstream 6020 18193496 ~ 18200773 (+)
G1670235 NA non-coding upstream 6633 18195309 ~ 18200160 (+)
G1670210 NA non-coding upstream 34082 18104943 ~ 18172711 (+)
G1670209 LOC105007702 non-coding upstream 74323 18051611 ~ 18132470 (+)
G1670197 LOC106593034 non-coding downstream 122434 18336845 ~ 18362915 (+)
G1670248 NA non-coding downstream 146709 18361120 ~ 18364878 (+)
G1670185 NA non-coding downstream 155235 18369646 ~ 18391878 (+)
G1670201 NA non-coding downstream 156815 18371226 ~ 18742987 (+)
G1670254 NA non-coding downstream 249865 18464276 ~ 18486211 (+)
G1670125 LOC105007702 other upstream 427419 17717036 ~ 17812707 (+)
G1670126 NA other upstream 433091 17767481 ~ 17773702 (+)
G1670129 NA other upstream 445981 17752294 ~ 17760812 (+)
G1670091 NA other upstream 629531 17572831 ~ 17577262 (+)
G1671091 NA other downstream 2013384 20227795 ~ 20228168 (+)
G1672918 NA other downstream 2874992 21089403 ~ 21089830 (+)
G1672973 NA other downstream 2926114 21140525 ~ 21191078 (+)
G1673044 NA other downstream 3081961 21296372 ~ 21296854 (+)

Expression


Co-expression Network