G1670197 (LOC106593034)


Basic Information

Item Value
gene id G1670197
gene name LOC106593034
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18336845 ~ 18362915 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1910958
acttcttcctgtgccagtgtcacctggagctggagaactacaacgaggtcatcggcaacctgcagagagcttacaatctggccaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagtgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaacagggccattctttcacctgacagctagccagccggagaga

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase CHIP

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1910958 True 295 lncRNA 0.52 3 18336845 18362915

Neighbor

gene id symbol gene type direction distance location
LOC118942046 NA coding upstream 493755 17838093 ~ 17843090 (+)
LOC118942045 NA coding upstream 721395 17607281 ~ 17615450 (+)
LOC118942044 NA coding upstream 731679 17600129 ~ 17605166 (+)
LOC118942043 NA coding upstream 749658 17580590 ~ 17587187 (+)
LOC118942042 LOC105021261 coding upstream 841104 17484324 ~ 17495741 (+)
LOC110499153 LOC106589263 coding downstream 731967 19094882 ~ 19201695 (+)
LOC110499151 LOC106589264 coding downstream 844337 19207252 ~ 19242695 (+)
LOC110499149 LOC106589267 coding downstream 932208 19295123 ~ 19303669 (+)
LOC110499145 LOC106589268 coding downstream 948455 19311370 ~ 19350990 (+)
LOC118942048 NA coding downstream 1013324 19376239 ~ 19378591 (+)
G1670233 LOC105021261 non-coding upstream 113543 18163784 ~ 18223302 (+)
G1670238 LOC105021261 non-coding upstream 122434 18206793 ~ 18214411 (+)
G1670229 NA non-coding upstream 133850 18196135 ~ 18202995 (+)
G1670231 NA non-coding upstream 136072 18193496 ~ 18200773 (+)
G1670235 NA non-coding upstream 136685 18195309 ~ 18200160 (+)
G1670185 NA non-coding downstream 6731 18369646 ~ 18391878 (+)
G1670201 NA non-coding downstream 8311 18371226 ~ 18742987 (+)
G1670254 NA non-coding downstream 101361 18464276 ~ 18486211 (+)
G1670264 NA non-coding downstream 169358 18532273 ~ 18536108 (+)
G1670273 NA non-coding downstream 331026 18693941 ~ 18699795 (+)
G1670209 LOC105007702 other upstream 215678 18051611 ~ 18132470 (+)
G1670125 LOC105007702 other upstream 557471 17717036 ~ 17812707 (+)
G1670126 NA other upstream 563143 17767481 ~ 17773702 (+)
G1670129 NA other upstream 576033 17752294 ~ 17760812 (+)
G1670091 NA other upstream 759583 17572831 ~ 17577262 (+)
G1671091 NA other downstream 1864880 20227795 ~ 20228168 (+)
G1672918 NA other downstream 2726488 21089403 ~ 21089830 (+)
G1672973 NA other downstream 2777610 21140525 ~ 21191078 (+)
G1673044 NA other downstream 2933457 21296372 ~ 21296854 (+)

Expression


Co-expression Network