G1671541


Basic Information

Item Value
gene id G1671541
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18350871 ~ 18369173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1912485
gttgaaacggagacaaatatgcatatatttagatatctttccttcattgatccataatattctgaacccgttctctcaatatattctattgagtctgttgacaaaaaccaaagtgaaaaggtgtactgtatttaaagggatgacttattaagacaaatgtactgaaaaccctattgaataaaaactccacgagaacatctgttggccagccagtgggaaggtttctagcagttcaattacacttatttggcgtgcgcaagtgaaccacgcctacaaagcctgttacgcaccttaataaggttactctgaataccaactactaaaaagtatataggaaaggcgttatttcctaaatcggacccttagtgaatacaggcccaaacttaatctgtgtctaggaaactggccttgagggttggtcctgacctctctgcaggttgccgatgacctcgttgtagttctccagctccaggtgacactggcacaggaagaagtgggctttgacagaatgggggtccagttccagcgcgtgcttgcagtccgccagggctttgtcgttctgcttgcagcttcacttggcacagagtacggttggtgtaggacaccgccactgaggggttacggttctgttggcaagatgtatacacacacacacaggtgcaaccacgcacgttacatattgcacaagctatttttgtaagagtgcatcagaccaagctacttctattctgacatctattcagagtaggtgaataggacagtgtcaatatctcatatcatatagactttcagtcatctgaaaaggtgtagacattttacatcatcattccccttaagagcagtagcttgctactcactatggttttgctgtagcaggtggcagcttcctggtacttgcggcagaggaacagttggttgccctgctccttcagctcctgtgctgtggaactcttctctgggctgctagccatcttctctggtggctctgcagcgcccgctgggcactgtttccctatcctgttccccgtctctccggctggctagctgtcaggtgaaagaatggccctgttctttgtcttctcacaaactagaaaagaaagataggcagcatcagcaacagttgctgctgcgtgtggtgagg
>TU1912486
gttgaaacggagacaaatatgcatatatttagatatctttccttcattgatccataatattctgaacccgttctctcaatatattctattgagtctgttgacaaaaaccaaagtgaaaaggtgtactgtatttaaagggatgacttattaagacaaatgtactgaaaaccctattgaataaaaactccacgagaacatctgttggccagccagtgggaaggtttctagcagttcaattacacttatttggcgtgcgcaagtgaaccacgcctacaaagcctgttacgcaccttaataaggttactctgaataccaactactaaaaagtatataggaaaggcgttatttcctaaatcggacccttagtgaatacaggcccaaacttaatctgtgtctaggaaactggccttgagggttggtcctgacctctctgcaggttgccgatggcctcgttgtagttctccagctccaggtgacactggcacaggaagaagtgggctttgacagaatgggggtccagttccttgcagtccgccagggctttgtcgttctgcttgcagcttcacttggcacagagtacggttggtgtagtacaccgccactgaggggttacggttctgttggcaagatgtatacacacacacacaggtgcaaccacgcacgttacatattgcacaagctatttttgtaagagtgcatcagaccaagctacttctattctgacatctattcagagtaggtgaataggacagtgtcaatatctcatatcatatagactttca
>TU1912489
gttgaaacggagacaaatatgcatatatttagatatctttccttcattgatccataatattctgaacccgttctctcaatatattctattgagtctgttgacaaaaaccaaagtgaaaaggtgtactgtatttaaagggatgacttattaagacaaatgtactgaaaaccctattgaataaaaactccacgagaacatctgttggccagccagtgggaaggtttctagcagttcaattacacttatttggcgtgcgcaagtgaaccacgcctacaaagcctgttacgcaccttaataaggttactctgaataccaactactaaaaagtatataggaaaggcgttatttcctaaatcggacccttagtgaatacaggcccaaacttaatctgtgtctaggaaactggccttgagggttggtcctgacctctctgcaggttgccgatggcctcgttgtagttctccagctccaggtgacactggcacaggaagaagtgggctttgacagaatgggggtccagttccagcgcgtgcttgcagtccgccagggctttgtcgttctgcttgcagcttcacttggcacagagtacggttggtgtaggacaccgccactgaggggttacggttctgttggcaagatgtatacacacacacacaggtgcaaccacgcacgttacatattgcacaagctatttttgtaagagtgcatcagaccaagctacttctattctgacatctattcagagtaggtgaataggacagtgtcaatatctcatatcatatagactttcagtcatctgaaaaggtgtagacattttacatcatcattccccttaagagcagtagcttgctactcactatggttttgctgtagcaggtggcagcttcctggtacttgcggcagaggaacagttggttgccctgctccttcagctcctgtgctgtggaactcttctctgggctgctagccatcttctctggtggctctgcagcgcactgtttccctatcctgttccccgtc

Function

NR:

description
E3 ubiquitin-protein ligase CHIP-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1912485 False 1141 lncRNA 0.46 3 18350871 18369173
TU1912486 False 782 lncRNA 0.43 4 18354373 18369173
TU1912489 True 1020 lncRNA 0.46 2 18362914 18369173

Neighbor

gene id symbol gene type direction distance location
LOC110498760 stub1 coding downstream 898150 17442590 ~ 17452727 (-)
LOC110498759 NA coding downstream 919815 17428615 ~ 17434040 (-)
LOC110499078 LOC106578245 coding downstream 976556 17367169 ~ 17374315 (-)
LOC118942007 LOC106578245 coding downstream 988273 17359654 ~ 17362598 (-)
LOC118942041 LOC106611593 coding downstream 1000411 17346166 ~ 17350460 (-)
LOC110512504 NA coding upstream 4602 18373775 ~ 18381647 (-)
LOC118942047 NA coding upstream 14692 18383865 ~ 18384458 (-)
LOC110498770 LOC106589258 coding upstream 384921 18754094 ~ 18887492 (-)
LOC110499157 LOC106589261 coding upstream 520897 18890070 ~ 19003867 (-)
LOC110499154 LOC106589262 coding upstream 684953 19054126 ~ 19095333 (-)
G1671540 NA non-coding downstream 37 18347331 ~ 18350834 (-)
G1671538 NA non-coding downstream 18634 18331988 ~ 18332237 (-)
G1671531 NA non-coding downstream 26267 18321107 ~ 18324604 (-)
G1671526 NA non-coding downstream 129452 18215236 ~ 18221419 (-)
G1671491 NA non-coding downstream 202465 18142227 ~ 18148406 (-)
G1671546 NA non-coding upstream 16281 18385454 ~ 18387516 (-)
G1671453 NA non-coding upstream 18990 18388163 ~ 18391408 (-)
G1671548 NA non-coding upstream 23107 18392280 ~ 18398313 (-)
G1671554 NA non-coding upstream 90020 18459193 ~ 18465446 (-)
G1671478 NA other downstream 318029 18022444 ~ 18032842 (-)
G1670142 NA other downstream 656287 17687735 ~ 17694584 (-)
G1670145 NA other downstream 659005 17685976 ~ 17691866 (-)
G1670109 LOC105007702 other downstream 725423 17596615 ~ 17625448 (-)
G1671549 NA other upstream 31179 18400352 ~ 18406596 (-)
G1671550 NA other upstream 39951 18409124 ~ 18415464 (-)
G1671578 NA other upstream 196697 18565870 ~ 18624587 (-)
G1671580 NA other upstream 224880 18594053 ~ 18642884 (-)
G1671584 NA other upstream 262334 18631507 ~ 18632087 (-)

Expression


Co-expression Network