G1670185


Basic Information

Item Value
gene id G1670185
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18369646 ~ 18391878 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1910941
aactaatagtaaattggcagttgaataagtgttattattatgcctactcacagtcgatactgatagcggttaatatttaacatgatagaaataggagacaaagtcggggtagcctataattaagacattcaggagtgtccatccctgcaagttaaaaggccgtacaataaaattctgcataatggcacggcatgtcccagtgtgtaatcttggtttcatcagcccagaaaatattgtttctcatgtctgagaggccttcaagttgtagaactacctcaaggatgatcaatggaaacaggatgcacctcagctcaatttccagtatggtctgaatacttatgtaaataagcttacaatctggccaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagaggaatacattgcctgctcctctaaagtcaacctgaagcctatgtgggttatgaatgccttatgaacctgtcttcaatgacagtccatcaggatactatgaggtctacctgtgtcgattctaagcttcctgaagcaaccggaagtacccaaccagcagtttgtgatgaagagtgcattcaaccctgtgtaaatcggtcagttcttaacataaacacttaaaactcaggattctgtaaaggcataccccaatgaggatatgtgtttgtgtggcttcctgtgccaaccggaagtgccgtaattggtgtcacaggggctgtttcaaagggttgaAAAAAGTcaaatctttccaaaacttcatttgtgtgattaggcaactc
>TU1910942
atagcatgcaacaccccgaaatacctgaaggcgacgtaaacaaaataattagcgtagccggcactacacaaatagcagaaataaaatataaaaaattcattacctttgacgagcttctttgttggcactcctatatgccctataaacatcactattgggtcttttttttcgattaaatcggtggaaactgtgattcagaaaaaaacaccGTTTTCAAAACGCAGCGTCATTCCTTAAAATTAAAAAGGTCGACTATAAACtgtcacaaaacacttcgaaatacttttgtaatccaactttaggtattagtaaacgttaataatctatcaaattgatcacggggcgatgtgtaatttaatagctccacgtcttcaaatcatgttaggaaatctctcttccaaaacttcctgtcggagaccggatggaATGGGGTTTCTTctttgtttgaccaagaaataactcccagaaattgacaagactggcgacatcgtgtggaagctgtaggaaatTGCAATCTCAGCACCATTTAATTTGgtgtggcgcatggatatttttttcagtgaccagtttttcttgcgctttttgatgaaacacacgctctgttatagccacagccgtgatttaactaGTTTTAGAAACGTGAGAgcgttttctatccacacatactaatcacatgcatatactatattcctggcatgagtagcaggacgctgaaatgttgcgcgatttttaacagaatgttcgaaaaagtagggggtaggCTTAACACTTAAAACTCATGATTCTGTAAagggcataccccaatgaggatatgtgtttacctatagcttcctgtgccaaccgaaagtgccataattggtgtcagatGGGCtgtttggcgacatcgtgtggaagctgtaggaattgcaatgtCAGCACCATtttaatttggtgtcccttaAAAAAATGTCAGATCTTAGGCAACTCCcaaatcagtaatttctcccaacaatgtcaaagaaaagctctcacacacacacagattacaacacctctcccctcattcctgaggtcctcccgatctgtgcaagtctaaccttgaccgcgtggcattaacccttaacagtaaaacagtttttttttgatctcacagattacaacgacatctctccccataggaatacattgcctgctcctctaaagtcaacctgaagcctatgtgggttatgaatgccttatgaacctgtcttcaatgacagtccatcaggatactatgaggtctacctgtgtcgattctaagcttcctgaagcaaccggaagtacccaaccagcagtttgtgatgaagagtgcattcaaccctgtgtaaatcggtcagttcttaacataaacacttaaaactcaggattctgtaaaggcataccccaatgaggatatgtgtttgtgtggcttcctgtgccaaccggaagtgccgtaattggtgtcacaggggctgtttcaaagggttgaAAAAAGTcaaatctttccaaaacttcatttgtgtgattaggcaactc
>TU1910943
atagcatgcaacaccccgaaatacctgaaggcgacgtaaacaaaataattagcgtagccggcactacacaaatagcagaaataaaatataaaaaattcattacctttgacgagcttctttgttggcactcctatatgccctataaacatcactattgggtcttttttttcgattaaatcggtggaaactgtgattcagaaaaaaacaccGTTTTCAAAACGCAGCGTCATTCCTTAAAATTAAAAAGGTCGACTATAAACtgtcacaaaacacttcgaaatacttttgtaatccaactttaggtattagtaaacgttaataatctatcaaattgatcacggggcgatgtgtaatttaatagctccacgtcttcaaatcatgttaggaaatctctcttccaaaacttcctgtcggagaccggatggaATGGGGTTTCTTctttgtttgaccaagaaataactcccagaaattgacaagactggcgacatcgtgtggaagctgtaggaaatTGCAATCTCAGCACCATTTAATTTGgtgtggcgcatggatatttttttcagtgaccagtttttcttgcgctttttgatgaaacacacgctctgttatagccacagccgtgatttaactaGTTTTAGAAACGTGAGAgcgttttctatccacacatactaatcacatgcatatactatattcctggcatgagtagcaggacgctgaaatgttgcgcgatttttaacagaatgttcgaaaaagtagggggtaggCTTAACACTTAAAACTCATGATTCTGTAAagggcataccccaatgaggatatgtgtttacctatagcttcctgtgccaaccgaaagtgccataattggtgtcagatGGGCtgtttggcgacatcgtgtggaagctgtaggaattgcaatgtCAGCACCATtttaatttggtgtcccttaAAAAAATGTCAGATCTTAGGCAACTCCcaaatcagtaatttctcccaacaatgtcaaagaaaagctctcacacacacacagattacaacacctctcccctcattcctgaggtcctcccgatctgtgcaagtctaaccttgaccgcgtggcattaacccttaacagtaaaacatttttttttgatctcacagattacaacgacatctctccccat

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1910941 False 891 lncRNA 0.43 3 18369646 18373810
TU1910942 False 1533 lncRNA 0.41 2 18371621 18373810
TU1910943 True 1154 lncRNA 0.40 2 18371621 18391878

Neighbor

gene id symbol gene type direction distance location
LOC118942046 NA coding upstream 526556 17838093 ~ 17843090 (+)
LOC118942045 NA coding upstream 754196 17607281 ~ 17615450 (+)
LOC118942044 NA coding upstream 764480 17600129 ~ 17605166 (+)
LOC118942043 NA coding upstream 782459 17580590 ~ 17587187 (+)
LOC118942042 LOC105021261 coding upstream 873905 17484324 ~ 17495741 (+)
LOC110499153 LOC106589263 coding downstream 703004 19094882 ~ 19201695 (+)
LOC110499151 LOC106589264 coding downstream 815374 19207252 ~ 19242695 (+)
LOC110499149 LOC106589267 coding downstream 903245 19295123 ~ 19303669 (+)
LOC110499145 LOC106589268 coding downstream 919492 19311370 ~ 19350990 (+)
LOC118942048 NA coding downstream 984361 19376239 ~ 19378591 (+)
G1670248 NA non-coding upstream 4768 18361120 ~ 18364878 (+)
G1670197 LOC106593034 non-coding upstream 6731 18336845 ~ 18362915 (+)
G1670233 LOC105021261 non-coding upstream 146344 18163784 ~ 18223302 (+)
G1670238 LOC105021261 non-coding upstream 155235 18206793 ~ 18214411 (+)
G1670229 NA non-coding upstream 166651 18196135 ~ 18202995 (+)
G1670254 NA non-coding downstream 72398 18464276 ~ 18486211 (+)
G1670264 NA non-coding downstream 140395 18532273 ~ 18536108 (+)
G1670273 NA non-coding downstream 302063 18693941 ~ 18699795 (+)
G1670192 LOC105007702 non-coding downstream 311595 18703473 ~ 18725994 (+)
G1670187 NA non-coding downstream 359582 18751460 ~ 18752626 (+)
G1670209 LOC105007702 other upstream 248479 18051611 ~ 18132470 (+)
G1670125 LOC105007702 other upstream 590272 17717036 ~ 17812707 (+)
G1670126 NA other upstream 595944 17767481 ~ 17773702 (+)
G1670129 NA other upstream 608834 17752294 ~ 17760812 (+)
G1670091 NA other upstream 792384 17572831 ~ 17577262 (+)
G1671091 NA other downstream 1835917 20227795 ~ 20228168 (+)
G1672918 NA other downstream 2697525 21089403 ~ 21089830 (+)
G1672973 NA other downstream 2748647 21140525 ~ 21191078 (+)
G1673044 NA other downstream 2904494 21296372 ~ 21296854 (+)

Expression


Co-expression Network