G1671557


Basic Information

Item Value
gene id G1671557
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18485977 ~ 18510389 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1912515
ttaagtgtttatgttaagaactgaccgatttacacagggttgaatgcactatttatcacaagctgctggttgggtatggaaaaacacgtttagggtgattttaaccacttccggttgcttcaggaagcttagaatcgacacaggtagacctcatagtatcctgatggactgtcattgaagacaggttcataaggcattcataacccacataggcttcaggttgactttagaggagcaggcaatgtattcctatggggagagatgtcgttgtaatctgtgagatcaaaaaaaaactgttttactgttaagggttaatgccacgcggtcaaggttaggcttgcacagatcgggaggacctcaggaacgtacctgatgtcgaattgtgcttctcaccctaacggttctctcactgtcacccaaaagcaaatgacatttagggccaggcttcattttgggcctacttttttcacggtcgctgcactcagagcgagctacggtcaagcggggcatctccttgaactcggaacggcctagagaatatggaaatgccattgcaggctctgtgtgtctttaagcaccgcactttgtcactccatccttgctgtgtgtgtgtgtgtgtgtgtgtgagagagcttttctttgacatctgttgggagaaatgactgatttacagttcatggggggaaaaaacaacataacttccaaaggttttcaaccacttttcgtgaacatgagaatatttctaccataaaactactacacgattttgtgtactttactcagaaaatatccttttagtcagatttccaacattggtgattaacatgatttaatatgacttttgtggcaatttctacagaaacactactaaaggacagaatggaggtataatttgtagaatttcaaccatgagatctttttcaataataatagaaataattgtatgcattttagtcagtgacattggtgattaacattaggcaatttctatcataaaattacaacacaacagaagtgaagtgccatttggagaatttcaacctcggagatattttataatatttgaggaaatcaattttacgtattttaacaggcaaagcataatttccaaaagatttcaaacactttgggaaatgcgtgcctgtagtgaaattgcatgtttgcatagcgcgcggaggtgatagtgcggcagagtcgatttccgcgcttataaacgcaacgtcgttacagtattttatcagcaaaacatcatttccaaaatatttcaaacacttgttaacatgatgtaatatgaccttgaggcaatttctaccacaaaactactaatggtaaggattggttttggggtattggtaacttttttgttattgaatcttacctcgcggtgctccgtcgtatatccgacgtcagcatgacaacaaactagctagctcttagctctctgttatagtatagttatagtatagttacagttcaatgggaaaagcaaatcaattaagacttgaaattgaaatatactggcacatcaatcgtctgtatatgaaattcatttgaaagggtgaggttaaagatgtttgtttttgtgtgtagttcaccactaatcggtagctaggtaacgttagtttaataaccgaaatttgagctaggctagctgttagctaacgcttgactttgtcatcatgagataacgttacattagacatacaagcttcgctagcgatatgtttttggaggcgtaatgaccttatctttcatatccgtgataacccattttcaaaaaactaaaatttaaattgatacacagctttatagggctggggttcccacacgaccatatttccatctcacagcgcttatttacggaagacagagtggactacctgagctaattagcaatctgtttctccgaatacgcctgctgtgtgaagacagacgccacaaacgtgttgttactgaaaaatactgttctgtgttaaccggttaagaccgtgtacagtaggtgtgtattttttttgcattagtgaaattattttgacgtgatatgaacctagagggatttatttcaagaaccgtaacgttactgcaactgagaatcgattcacgtttagatggcttcc
>TU1912516
tgacatttagggccaggcttcattttgggcctacttttttcacggtcgctgcattcagagcgagctacggtcaagcggggcatctcgttgaactcggaacggcctagagaatatggaaatgccattgcaggctctgtgtgtctttaagcaccgcactttgtcactccatccttgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagcttttctttgacatctgttgggagaaatgactgatttacagttcatggggggaaaaaacaacataacttccaaaggttttcaaccacttttcgtgaacatgagaatatttctaccataaaactactacacgattttgtgtactttactcagaaaatatccttttagtcagatttccaacattggtgattaacatgatttaatatgacttttgtggcaatttctacagaaacactactaaaggacagaatggaggtataatttgtagaatttcaaccatgagatctttttcaataataatagaaataattgtatgcattttagtcagtgacattggtgattaacattaggcaatttctatcataaaattacaacacaacagaagtgaagtgccatttggagaatttcaacctcggagatattttataatatttgaggaaatcaattttacgtattttaacaggcaaagcataatttccaaaagatttcaaacactttgggaaatgcgtgcctgtagtgaaattgcatgtttgcatagcgcgcggaggtgatagtgcggcagagtcgatttccgcgcttataaacgcaacgtcgttacagtattttatcagcaaaacatcatttccaaaatatttcaaacacttgttaacatgatgtaatatgaccttgaggcaatttctaccacaaaactactaatggtaaggattggttttggggtattggtaacttttttgttattgaatcttacctcgcggtgctccgtcgtatatccgacgtcagcatgacaacaaactagctagctcttagctctctgttatagtatagttatagtatagttacagttcaatgggaaaagca
>TU1912518
ttaagtgtttatgttaagaactgaccgatttacacagggttgaatgcactatttatcacaagctgctggttgggtatggaaaaacacgtttagggtgattttaaccacttccggttgcttcaggaagcttagaatcgacacaggtagacctcatagtatcctgatggactgtcattgaagacaggttcataaggcattcataacccacataggcttcaggttgactttagaggagcaggcaatgtattcctatggggagagatgtcgttgtaatctgtgagatcaaaaaaaaactgttttactgttaagggttaatgccacgcggtcaaggttaggcttgcacagatcgggaggacctcaggaacgtcgTACCTgatgtcgaattgtgcttctcaccctaacggttctctcactgtcacccaaaagcaaatgacatttagggccaggcttcattttgggcctacttttttcacggtcgctgcactcagagcgagctacggtcaagcggggcatctccttgaactcggaacggcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1912515 False 2117 lncRNA 0.39 2 18485977 18493803
TU1912516 False 1067 lncRNA 0.38 3 18486677 18510389
TU1912518 True 534 lncRNA 0.46 2 18487640 18493803

Neighbor

gene id symbol gene type direction distance location
LOC118942047 NA coding downstream 101519 18383865 ~ 18384458 (-)
LOC110512504 NA coding downstream 104330 18373775 ~ 18381647 (-)
LOC110498760 stub1 coding downstream 1033256 17442590 ~ 17452727 (-)
LOC110498759 NA coding downstream 1054921 17428615 ~ 17434040 (-)
LOC110499078 LOC106578245 coding downstream 1111662 17367169 ~ 17374315 (-)
LOC110498770 LOC106589258 coding upstream 243705 18754094 ~ 18887492 (-)
LOC110499157 LOC106589261 coding upstream 379681 18890070 ~ 19003867 (-)
LOC110499154 LOC106589262 coding upstream 543737 19054126 ~ 19095333 (-)
LOC110499148 LOC106589265 coding upstream 752602 19262991 ~ 19277123 (-)
LOC110499147 LOC106589265 coding upstream 766882 19277271 ~ 19294949 (-)
G1671555 NA non-coding downstream 19258 18460225 ~ 18466719 (-)
G1671554 NA non-coding downstream 20531 18459193 ~ 18465446 (-)
G1671548 NA non-coding downstream 87664 18392280 ~ 18398313 (-)
G1671453 NA non-coding downstream 94569 18388163 ~ 18391408 (-)
G1671546 NA non-coding downstream 98461 18385454 ~ 18387516 (-)
G1671562 NA non-coding upstream 5234 18515623 ~ 18523383 (-)
G1671565 NA non-coding upstream 12466 18522855 ~ 18613440 (-)
G1671572 NA non-coding upstream 28448 18538837 ~ 18544863 (-)
G1671576 NA non-coding upstream 41786 18552175 ~ 18617969 (-)
G1671581 NA non-coding upstream 99055 18609444 ~ 18614961 (-)
G1671550 NA other downstream 70513 18409124 ~ 18415464 (-)
G1671549 NA other downstream 79381 18400352 ~ 18406596 (-)
G1671478 NA other downstream 453135 18022444 ~ 18032842 (-)
G1670142 NA other downstream 791393 17687735 ~ 17694584 (-)
G1670145 NA other downstream 794111 17685976 ~ 17691866 (-)
G1671578 NA other upstream 55481 18565870 ~ 18624587 (-)
G1671580 NA other upstream 83664 18594053 ~ 18642884 (-)
G1671584 NA other upstream 121118 18631507 ~ 18632087 (-)
G1671859 LOC106589268 other upstream 816425 19326814 ~ 19406931 (-)

Expression


Co-expression Network