G1670192 (LOC105007702)


Basic Information

Item Value
gene id G1670192
gene name LOC105007702
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 18703473 ~ 18725994 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1910950
gctagcgcttagctctctgttatagtatagttacagttcaatgggaaaagcaaatcaattaagacctgaaattgaaatatactggcacatcaatcgtctgtatatgaaattcatttgaaaggtttgtgagaagacaaagaatagggccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgcagcgggcgctgcagaaccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataGCCTAACGTgccacctggagctggagaactacaacgaggccatcggcaacctgcagagagcttacaatctggccaaggagcagagactgaactttggagacgacatcccgagtgccctgcgggtcgctaagaagaagcgctggaatagcattgaggagaagcgcatcaaccaggagaacaagctgcatgcatatctcaccaaacttatcctagcagagaaggagagtttgtgagaagacaaagaatagggccattctttcacctgacagctagccagccggagagacgggaacaggata
>TU1910953
gcatcttagttgcacaaccatatgttgatgcataactagctagccagtgaaatgtgagggctcaatgtatgagttgcaacagcacctcaccacacgcagcagcaactgttgctgatgctgcctatctttcttttctagtttgtgagaagacaaagaatagggccattctttcacctgacagctagccagccggagagacggggaacaggatagggaaacagtgcgcagcgggcgctgcagaaccaccagagaagatggctagcagcccagagaagagttccacagcacaggagctgaaggagcagggcaaccgactgttcctctgccgcaagtaccaggaagctgccacctgctacagcaaaaccataGCCTAACGTgccacctggagctggagaactacaacgaggccatcggcaacctgcagagagtttgtgagaagacaaagaatagggccattctttcacctgacagctagccagccggagagacgggaacaggata
>TU1910951
tggaagagagatttccgaacatgatttgaagacgtggagctattgaattacacatcgccccgtgattaatttgatagattattaacgtttactaatacctaaagttggattacaaaagtatttcgaagtgttttgtgaaagtttatcgtcgacctttttaattttaaaaaatgacgctgcgttttgaaacagtgtttttttctgaatcacagtttccatagatggatattttgggtatatatcgaccgatttaatcgaaaaaaaagacccaacagtgatgtttatggggcatataggagtgccaacaaagaagctcgtcaaagtttgtgagaagacaaagaatagggccattctttcacctgacagctagccagccggagagacgggaacaggata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1910950 False 651 lncRNA 0.50 5 18703473 18725994
TU1910953 False 501 lncRNA 0.52 3 18704584 18725994
TU1910951 True 396 lncRNA 0.37 2 18720832 18725994

Neighbor

gene id symbol gene type direction distance location
LOC118942046 NA coding upstream 860383 17838093 ~ 17843090 (+)
LOC118942045 NA coding upstream 1088023 17607281 ~ 17615450 (+)
LOC118942044 NA coding upstream 1098307 17600129 ~ 17605166 (+)
LOC118942043 NA coding upstream 1116286 17580590 ~ 17587187 (+)
LOC118942042 LOC105021261 coding upstream 1207732 17484324 ~ 17495741 (+)
LOC110499153 LOC106589263 coding downstream 368888 19094882 ~ 19201695 (+)
LOC110499151 LOC106589264 coding downstream 481258 19207252 ~ 19242695 (+)
LOC110499149 LOC106589267 coding downstream 569129 19295123 ~ 19303669 (+)
LOC110499145 LOC106589268 coding downstream 585376 19311370 ~ 19350990 (+)
LOC118942048 NA coding downstream 650245 19376239 ~ 19378591 (+)
G1670273 NA non-coding upstream 3678 18693941 ~ 18699795 (+)
G1670264 NA non-coding upstream 167365 18532273 ~ 18536108 (+)
G1670254 NA non-coding upstream 217262 18464276 ~ 18486211 (+)
G1670185 NA non-coding upstream 311595 18369646 ~ 18391878 (+)
G1670248 NA non-coding upstream 338595 18361120 ~ 18364878 (+)
G1670187 NA non-coding downstream 25466 18751460 ~ 18752626 (+)
G1670186 NA non-coding downstream 26744 18752738 ~ 18753753 (+)
G1670369 NA non-coding downstream 218653 18944647 ~ 18944883 (+)
G1670371 NA non-coding downstream 220273 18946267 ~ 18946564 (+)
G1670378 NA non-coding downstream 325626 19051620 ~ 19051951 (+)
G1670209 LOC105007702 other upstream 582306 18051611 ~ 18132470 (+)
G1670125 LOC105007702 other upstream 924099 17717036 ~ 17812707 (+)
G1670126 NA other upstream 929771 17767481 ~ 17773702 (+)
G1670129 NA other upstream 942661 17752294 ~ 17760812 (+)
G1670091 NA other upstream 1126211 17572831 ~ 17577262 (+)
G1671091 NA other downstream 1501801 20227795 ~ 20228168 (+)
G1672918 NA other downstream 2363409 21089403 ~ 21089830 (+)
G1672973 NA other downstream 2414531 21140525 ~ 21191078 (+)
G1673044 NA other downstream 2570378 21296372 ~ 21296854 (+)

Expression


Co-expression Network