G1671895 (LOC107575789)


Basic Information

Item Value
gene id G1671895
gene name LOC107575789
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 19432139 ~ 19435041 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1912901
agaaggtgacaacagttggtgcgattattcgcaaatggaagaaacacaaaagaactgtcaatctacctcggcctggggctccatgcaagatctcacctcgtggagttgcaatgatcatgagaactgtgaggaatcagcccagaactacatctTGCAatggaggatcttgtcaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattagtAACacaccgtgaaggactgaaatcctgcagcgcccgcaaggaatccccctgctcaagaaagcacatatacatgcccgtctaaagtttgccaatgaacatctgaatgattcagaggacaaactgggtgaaagtgttgtcagatgagaccaaaatagagctctttgatatcaactcaactcgccgtgtttggaggaggaggaatgctgcctatgaccccaagaacacaatccccaccgtcaaacatggaggtggaaacattatacTTTGGGCGGggttttctgctaaggggacaggataacttcaccgcatcaaagggacgatggacgggaccatgtaccgtcaaatcttgggtgaggacctccttccctcagccagggcattgaaaatgggtcgtggatgggtattccagcatgacaatgacacaaaacacacggccaaggcaacaaaggagtggctcaagaagaagcacattaaggtcctggagtggcctagccagtctccagaccttaatcccatagaaaatctgtggagggagctgaaggttcgagttgccaaacgtcagcctccaaaccttaatgacttggagaagatctgcaaagaggagtgggacaaagtccctcctgagatgtgtgcaaacctggtggccaactacaagaaacgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagtcatgttttgcagaggggtcaaatacttatttccctcattaaaatgcaaatcaatttataacattttttacatgcgtctttctggatttttttgttgttattctgtctctcactcaaataaacctaccattaaaaattatagacggataatttctttgtcagtgggcaaacatacaaaatcagcaggggatcaaatactcaCAAGctttatacagtacagtaattGTACTAGCAGTGACATAGTTTCAAGGTTAAATCTATTTTAGAGGAATGTTAGATTAAAAGTGCCGAGTCATCAGCCTAGAGCTTAATGATACAGTATGTCTAAACGGAAAGTGCTGCATCACAGTGTGCAGCAAGTCTCCACTAGTCCATAAGCCTGACCAGTAGAGCTATTATAAGGGATGTTCTCATGATTGTCAATTGGTAAGTAAAACGAGGACCGCCATCCCTCGAGGCTAAAACCAGTTGAGTCAACATAGTTTCCTAGTTATTCCAACCTTACAGTACAGAGTATATTCCCCAGTGGAGAATACTAATATTATCCGCTGAAAGTAATACAGTTCACCCAATGCTTACTAGACAGTTCCAGAACAAAAAGTTTGAATTTCTAAACGATAAAACAAAGTGCAATTACAGTATTTATGAACAGAGAAACCTCAAAGATTAAGAGGGTCCcatgttttttttactgtttATACTGATGTTTTTTTGCTTTTGTCTTAATTCTGCCTGTAGTGATGCAACAAATGCTAATCATGCCATATTATTTTGAGgaattcaaaaaatatataatatagacAAAATTGCATTTACATTATTGAAAGCTGTTCTTACAATTTGGATGTGCTGAAGTGAATGGCCAGTTCTGTGTCTATCTAGACGTTTGTCGGTGGTGATAATATGCTGTTCTGTGGCTGTTCTGTTCATGAGTAATGGTTTGTACATATTGATTGAAAACACAACTTTATTAACATCGGAAATCCTGTCTATCAAGGGCAGTAGTTGGTGAGAGAGATTCCACAGAATATTTCCactgttacatttttttttaaaacatgccCTTTGAGTTACTGTaagataaaaacatgttttttcaaTGAATAGGAGGAATGTACTAGTGACTATTTGGACTGTTTGCCTCAGGTTGCTTTAAGGGGGAATTCTCTGTGTTGTGGATGTAGTTTTAACAGGGTGGACAGGTGTTTGGCCGTGATGTGAACAGGCTTGGGGATTATGACTAGACATTGTTCTATGTGTGAAAATCAGCAGCATGATTTTTCATCATGCTTGTGAAATTTGTCTTATCTTTGGTCCTATTTACCTGTGCGTgtcatatttatttttatatgtGAAAAGAAAAAAGAGCCTTGCAATGCAGGTAGAATTGTTCCGTTTTGCCCTATGATCAGTTTATCAGTCCACAGTTCTTGTATTGCATTTTGCTCCTACTTCCATCCTGTCAATCAACTATTCACTCAGCAGAGTCAAATAAatatgatggaggctactgtacATCTAAGCATGACTTAATAATTGCCAAACTGAATTACTTTATGCAACTTGGAGACAATATAGCATCTAACTTTTAGCTTTTTTGCCTAATGAGTCAAGACAGAATGACACTGAATGGATgacttgtatttatttttgtctgGATAACCTTTATATCGGCATAAATCAATCCAATTATCCATCAGATGAACAAATCCTGATTTATATTAGGCAAAACAAAGATAGACCTTTTTTATTGGTCAATCAGGCAAGCCTGAAAAAGTGTGAGATATAACACACCTGGTTTGCCTGTATAAACATTTGCAAATGATGACACAGTGGTGCATGCAGCTATTGTTTGGTAAGCAAGTACATCTTCATGAATGTGTTTGCATAGTTATGTTCAAATAATACATTTATACAAGGGGGCCAAAATAAAAGGGAAGGTTTGATGATCC

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1912901 True 2878 TUCP 0.40 2 19432139 19435041
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110499142 LOC106589272 coding downstream 9194 19401489 ~ 19422945 (-)
LOC110499144 LOC106589269 coding downstream 55907 19361616 ~ 19376232 (-)
LOC110499146 NA coding downstream 119838 19305650 ~ 19312301 (-)
LOC110499150 NA coding downstream 126540 19304115 ~ 19305599 (-)
LOC110499147 LOC106589265 coding downstream 137190 19277271 ~ 19294949 (-)
LOC110498769 LOC106589273 coding upstream 3550 19438591 ~ 19555924 (-)
LOC110499140 LOC106589275 coding upstream 149843 19584884 ~ 19613597 (-)
LOC110499139 NA coding upstream 179501 19614542 ~ 19640508 (-)
LOC110499136 LOC106589278 coding upstream 227516 19662557 ~ 19670039 (-)
LOC110499132 calcoco2 coding upstream 261194 19696235 ~ 19706467 (-)
G1671856 NA non-coding downstream 35103 19383990 ~ 19397036 (-)
G1671877 NA non-coding downstream 97208 19333404 ~ 19334931 (-)
G1671848 NA non-coding downstream 128042 19299958 ~ 19304097 (-)
G1671831 NA non-coding downstream 175287 19256463 ~ 19256852 (-)
G1671830 NA non-coding downstream 176666 19255051 ~ 19255473 (-)
G1672002 NA non-coding upstream 211819 19646860 ~ 19647148 (-)
G1672003 NA non-coding upstream 212157 19647198 ~ 19647493 (-)
G1672004 NA non-coding upstream 212799 19647840 ~ 19648067 (-)
G1672006 NA non-coding upstream 213980 19649021 ~ 19649230 (-)
G1672023 NA non-coding upstream 248910 19683951 ~ 19684278 (-)
G1671859 LOC106589268 other downstream 25208 19326814 ~ 19406931 (-)
LOC110499154 LOC106589262 other downstream 358952 19054126 ~ 19095333 (-)
G1671580 NA other downstream 789255 18594053 ~ 18642884 (-)
G1671584 NA other downstream 800052 18631507 ~ 18632087 (-)
G1671578 NA other downstream 807552 18565870 ~ 18624587 (-)
G1672381 LOC106589294 other upstream 814418 20249459 ~ 20251165 (-)
G1672588 NA other upstream 1185701 20620742 ~ 20670417 (-)
G1672649 dhx8 other upstream 1294234 20729275 ~ 20730072 (-)
phf5a LOC102780084 other upstream 2153988 21589006 ~ 21596518 (-)
G1673740 LOC106589538 other upstream 2401292 21836333 ~ 21844793 (-)

Expression

G1671895(LOC107575789) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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G1671895(LOC107575789) Expression in each Bioproject

Bar chart with 21 bars.
G1671895(LOC107575789) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network