Gene
RNA
| Item | Value |
|---|---|
| gene id | G1672115 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 19884508 ~ 19968165 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| chromobox protein homolog 1 isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1913157 | True | 888 | lncRNA | 0.47 | 2 | 19884508 | 19968165 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110499128 | LOC106589286 | coding | downstream | 19079 | 19849403 ~ 19865429 (-) |
| LOC118942049 | NA | coding | downstream | 38012 | 19843106 ~ 19846496 (-) |
| LOC110499132 | calcoco2 | coding | downstream | 178041 | 19696235 ~ 19706467 (-) |
| LOC110499136 | LOC106589278 | coding | downstream | 214469 | 19662557 ~ 19670039 (-) |
| LOC110499139 | NA | coding | downstream | 244000 | 19614542 ~ 19640508 (-) |
| LOC110499121 | LOC106589293 | coding | upstream | 44908 | 20013073 ~ 20126587 (-) |
| trnaa-ugc-145 | NA | coding | upstream | 198471 | 20166636 ~ 20166705 (-) |
| LOC110499118 | LOC106589297 | coding | upstream | 329379 | 20297544 ~ 20308774 (-) |
| LOC110499116 | wnt3 | coding | upstream | 400831 | 20368996 ~ 20407349 (-) |
| LOC110499110 | LOC106589303 | coding | upstream | 797958 | 20766123 ~ 20807510 (-) |
| G1672063 | NA | non-coding | downstream | 141555 | 19742569 ~ 19742953 (-) |
| G1672041 | NA | non-coding | downstream | 172746 | 19711504 ~ 19711762 (-) |
| G1672023 | NA | non-coding | downstream | 200230 | 19683951 ~ 19684278 (-) |
| G1672006 | NA | non-coding | downstream | 235278 | 19649021 ~ 19649230 (-) |
| G1672004 | NA | non-coding | downstream | 236441 | 19647840 ~ 19648067 (-) |
| G1672294 | NA | non-coding | upstream | 146376 | 20114541 ~ 20129012 (-) |
| G1672363 | NA | non-coding | upstream | 259039 | 20227204 ~ 20230281 (-) |
| G1672410 | NA | non-coding | upstream | 319254 | 20287419 ~ 20334652 (-) |
| G1672414 | NA | non-coding | upstream | 345102 | 20313267 ~ 20314911 (-) |
| G1671895 | LOC107575789 | other | downstream | 449467 | 19432139 ~ 19435041 (-) |
| G1671859 | LOC106589268 | other | downstream | 477577 | 19326814 ~ 19406931 (-) |
| LOC110499154 | LOC106589262 | other | downstream | 811321 | 19054126 ~ 19095333 (-) |
| G1671580 | NA | other | downstream | 1241624 | 18594053 ~ 18642884 (-) |
| G1672381 | LOC106589294 | other | upstream | 281294 | 20249459 ~ 20251165 (-) |
| G1672588 | NA | other | upstream | 652577 | 20620742 ~ 20670417 (-) |
| G1672649 | dhx8 | other | upstream | 761110 | 20729275 ~ 20730072 (-) |
| phf5a | LOC102780084 | other | upstream | 1620864 | 21589006 ~ 21596518 (-) |
| G1673740 | LOC106589538 | other | upstream | 1868168 | 21836333 ~ 21844793 (-) |
