G1672381 (LOC106589294)


Basic Information

Item Value
gene id G1672381
gene name LOC106589294
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 20249459 ~ 20251165 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1913435
CCTTTCTTCCCCCCTCTGCCTCGCTACCACTACCTCTCTCACTCCTCAGCCTCGCTTTCattcaccccccatctcactcgCTGTTTCTTCCTCCCTTTCTTTCCCCCTTTCTGCTCTTTATCCACAAGGTTAACTTTCAAGATATAAGCCACCTGCACTGCAATACTAGAGATTAAACTTTGGGACGCACTTTGACTACTTGAAAACGAGAGGTTCAAATTCAGGTGTACTGCAGGTTACATAAACAGAGTTGTGATGAAAAGCCATGAAAAAATAAATCAATAGCAGGGACGTGCTGCTGTAAATCTAAAAAGAACCCAGAGGACTTAACCACGGGAAACAAGGATCATAGGATCCGTGTGCCTTATCGTCCACCAAATCAGtgagaacgttttttttttaacacaacaTTAATGCAGTGGATAAAGGATGGGAAGAGTTGTACATTTAAACCTTGTTGCCTTAGCGACAAATAACAGTCTCCGTACGTAGTATGATAAGATCATCTCTAAGACGAGAGTTGATAACAATTACGATTAGTTCAAACAAAACAAAATTCCATTTCATCTCCTTTAAATCAGTCTACGGAGACGTGAAAATGGCAATTATTCCATTATCTCTACATAGTGTTTCATTTCCTGTTCCACAAACCATGCTATTAATCAATTATCAATTGAGAATGATTTTTAGAGACCCTTTAGACTGTTTAGAGCCACAGCTAGTAAGATGTCCATTCATTTCAACTACACAATACACTATATTAACCACACAGGGGAGGTGCTCTTACATTGTAGAGGGGGATGCTCTTCATGGGCTTGTACTGCTTGAGGGGGTCCATCTTGTATAGGTGGCGGTCTGTGATGAGGACGGCCCGGTCCTCTGCCTTGTGGAAACGGTTGATCTTGCGCACGTTACAGGAGAAGAGCACTCTCATGAACTTGTCCTTACGCTGCAACTCACAGGACACCAAGGTGAAGGAGGATGCTGTGTCAGGACTGTCTCGCTTCAGGTAGTTGCCCTCCCAGGTCCTTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1913435 True 1033 TUCP 0.43 3 20249459 20251165

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-145 NA coding downstream 82754 20166636 ~ 20166705 (-)
LOC110499121 LOC106589293 coding downstream 122872 20013073 ~ 20126587 (-)
LOC110499122 LOC106589292 coding downstream 288103 19941466 ~ 19961356 (-)
LOC110499124 LOC106589290 coding downstream 335589 19907335 ~ 19913870 (-)
LOC110499125 LOC106589287 coding downstream 351139 19886553 ~ 19898320 (-)
LOC110499118 LOC106589297 coding upstream 46379 20297544 ~ 20308774 (-)
LOC110499116 wnt3 coding upstream 117831 20368996 ~ 20407349 (-)
LOC110499110 LOC106589303 coding upstream 514958 20766123 ~ 20807510 (-)
LOC110499109 LOC106589309 coding upstream 611185 20862350 ~ 20872069 (-)
LOC118941997 LOC106589179 coding upstream 704034 20955199 ~ 20957806 (-)
G1672363 NA non-coding downstream 19178 20227204 ~ 20230281 (-)
G1672294 NA non-coding downstream 120447 20114541 ~ 20129012 (-)
G1672173 NA non-coding downstream 208202 19943973 ~ 20041257 (-)
G1672119 NA non-coding downstream 278946 19905197 ~ 19970513 (-)
G1672115 NA non-coding downstream 281294 19884508 ~ 19968165 (-)
G1672410 NA non-coding upstream 36254 20287419 ~ 20334652 (-)
G1672414 NA non-coding upstream 62102 20313267 ~ 20314911 (-)
G1672518 NA non-coding upstream 249238 20500403 ~ 20500608 (-)
G1672519 NA non-coding upstream 250603 20501768 ~ 20501975 (-)
G1671895 LOC107575789 other downstream 814418 19432139 ~ 19435041 (-)
G1671859 LOC106589268 other downstream 842528 19326814 ~ 19406931 (-)
LOC110499154 LOC106589262 other downstream 1176272 19054126 ~ 19095333 (-)
G1671580 NA other downstream 1606575 18594053 ~ 18642884 (-)
G1671584 NA other downstream 1617372 18631507 ~ 18632087 (-)
G1672588 NA other upstream 369577 20620742 ~ 20670417 (-)
G1672649 dhx8 other upstream 478110 20729275 ~ 20730072 (-)
phf5a LOC102780084 other upstream 1337864 21589006 ~ 21596518 (-)
G1673740 LOC106589538 other upstream 1585168 21836333 ~ 21844793 (-)
G1674299 NA other upstream 2080185 22331350 ~ 22331806 (-)

Expression


Co-expression Network