G1672785


Basic Information

Item Value
gene id G1672785
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21040169 ~ 21041867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1913870
TAAAACACAATCTCTTTGTAAAGGGGGAGAATAAAAAAAAGTGCATTATAGATATTTACTATGTTAAGCGCCACACTGTATTATTGTCAGGTAGTTCAACCATGTAGCTCTATTAATATTGTTTACTACTGGGAGAGGTTACTGGGATCAACGCACTGAATGTAGCAAAAATAAtatgacatgtacagtatatgaacATTATAAAATTATAATGCTCTATAGTGGTGCCAAAAATGGGGTGGACAGTGGCAGCCTTTAGAGTATGGTTGGGATCGGACCAGGGCCTATTGGAATAGTACTGTTTAACACGTGTGATGTCTCTCCCTGAGCACATTCTGAACACTGTGACCTTAGCCCATCTTAACCATAAATAGTCCCCTTCCTCTGTCAATACAACTCAACTCAAATCAATCAAGTACTTTACTGAGTTACTGCTTTACTGCACACATGCATCCTGTATAACATTACCGAAGCAATTCCAATATAATTGATCATAGATCCCATGTTCGCTCCAGGCTCCTCAAACTCCCAGCCAACCAATCTTCCTCCACTCTTCGTCCTTCACCTTCATCTatctctcactcactcgctctcttCCCCATCTGCTTGTCTTTCTCCTGCACTTGAGTCTCTGAGCCATTCTGTGTTGTCTGGTAggatgacctctctctcccccctttggCATGCTGTGGGCTGAAGATCAATTGAGGCCGCCACACTGCGAGTGTCTCAGATAGcgaaaaaagaaaacaaatgaTGTAAGCATCTAAAAAGCGCACTGTGTGCTGCTTTATCAAGCGTTCATCTCTATTTATCGGCTAAGTTGCTGCTACTGTTATGTCAGACAGGTGTGTTTTGTGCGTGTCCCacccttcccttctttcctttccCCGATGACAGCCCATCATCCCTGTCGCTATAGTGACAGTCAGTGTTTTTATGGTTAGTTTCTCAGCTCCTGTCCACTCCCGAAACATCAAACATAATTGTTGGGTCTGGTCATTCTGCAACAACACCAGTATTATTAACAACACTTCCCTGCTAGCCAGAGTTCTCATAGCAATTGCCTTCCACATATAatgtgtagtatacagtatgtctgttCTACTATGTCGGCAATGTCAGTCTCATTCTATCACATATACTATGTACATACATCTGTTGTACTGTTTACGTTTGTCAAAATCTGTTCAATTCACCTTCCTTCTTCCTCCATCGTCTCTAGAACACCTACCTGCTAGTCATGAAGTCAGTGCCCTTGTCATATGTCACACTTTAAGGATGACCGTAGTCAGAGGAGAATGGTGGTTCATTGACCTCAATCTGGGCGGAGATTTTCTGTGATCACTCATAGGGTGAATGCGTGCATAACTTGCATATGTAGCCTCTACTTATGTCAAGATGCATACACTGTTTTGCTGTGTGAATTGTGAATATTTATAGTTTTGTTCGATATTGCACAACCGTATACATCAGAACAGTGTTATGTCAGTTGTCATAAGTGTCAAGTTTTTGTCAGACTGTTATAATAGGTTATGTAGGCATTATGATCACATTGTGTAATGTTCATTTCAGTTTTGTAGCCTACTGTTTACCTCAGTTATGTCCTGATCCTACTAGCTGGTCTCCACCAGCAAGTTGAATTCTGTAAATGTACAAATGTATTTAACACAGAAACAAATAAACTGTTTAATATTga

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1913870 True 1699 lncRNA 0.41 1 21040169 21041867

Neighbor

gene id symbol gene type direction distance location
LOC110499108 LOC106578253 coding upstream 58 21002651 ~ 21040111 (+)
LOC110499111 LOC106589301 coding upstream 276087 20735432 ~ 20764082 (+)
LOC110499112 LOC106589300 coding upstream 304830 20706399 ~ 20735339 (+)
LOC110499114 LOC105007436 coding upstream 352106 20654464 ~ 20688063 (+)
LOC118942050 NA coding upstream 396101 20493325 ~ 20644068 (+)
LOC110499107 LOC106578254 coding downstream 112668 21154535 ~ 21168654 (+)
trnal-uag-53 NA coding downstream 186656 21228523 ~ 21228604 (+)
LOC110499104 LOC106589524 coding downstream 192344 21234211 ~ 21277617 (+)
LOC110499103 LOC106589525 coding downstream 290427 21332294 ~ 21377525 (+)
LOC110499101 ku70 coding downstream 363655 21405522 ~ 21420610 (+)
G1672770 NA non-coding upstream 69199 20970769 ~ 20970970 (+)
G1672769 NA non-coding upstream 70795 20968691 ~ 20969374 (+)
G1672768 NA non-coding upstream 88482 20951478 ~ 20951687 (+)
G1672766 NA non-coding upstream 111960 20927949 ~ 20928209 (+)
G1672765 NA non-coding upstream 123329 20915765 ~ 20916840 (+)
G1672856 NA non-coding downstream 1912 21043779 ~ 21043989 (+)
G1672877 NA non-coding downstream 13934 21055801 ~ 21056489 (+)
G1672881 NA non-coding downstream 15775 21057642 ~ 21057897 (+)
G1672882 NA non-coding downstream 17548 21059415 ~ 21059760 (+)
G1672888 NA non-coding downstream 20338 21062205 ~ 21062661 (+)
G1671091 NA other upstream 812001 20227795 ~ 20228168 (+)
LOC110499153 LOC106589263 other upstream 1914933 19094882 ~ 19201695 (+)
G1670209 LOC105007702 other upstream 2919002 18051611 ~ 18132470 (+)
G1670126 NA other upstream 3266467 17767481 ~ 17773702 (+)
G1670129 NA other upstream 3279357 17752294 ~ 17760812 (+)
G1672918 NA other downstream 47536 21089403 ~ 21089830 (+)
G1672973 NA other downstream 98658 21140525 ~ 21191078 (+)
G1673044 NA other downstream 254505 21296372 ~ 21296854 (+)
G1673063 NA other downstream 274931 21316798 ~ 21317412 (+)
G1673204 NA other downstream 344462 21386329 ~ 21389778 (+)

Expression


Co-expression Network