G1673621


Basic Information

Item Value
gene id G1673621
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21634804 ~ 21636028 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1914827
AATACAGTAGTAACTTTTTATCCTAATGACAACACGTTAGTCACAGTGAATCGACGTAAAAAGTGCTCTAGAACACAATGAAACTTCAGACAGTTTCCCAACATAAGAAGAGACACATAGTACTATATAATTTAGTCACAATAAATAAAACATGGTATTAACAATGCATATAAACCTAATTATGTTTACAAAAGACTAAAACTGCATGATGAAAGTATGAGACTATTGACAACAGTACATGTTCATTTCTTGTCTATTACTATGATAACATGTGTTTTAATGATTTTTTAAAAAGGAGTTTTGAACCTCATATAGTAATCATCAATAACTCTGTTACAAAGATTAATAAATTGTCATTGGTCAACATTAGACTGAAGGAGTGGGCATTACCAGGGCAGTATCATCAGAGTGAATTGTGCGATGGGTTAGACCAGGCATATATTGGCATTAAAACACAAATGTATAATCTTAACAATATCTACCTCACTTGTCATAAcgaataaaaattaaataaataaatcaaagtaTGAATAAAAACAACATCATTTAGGAAGGTTTGTTGCTCTTTGTTTCACAGTTTTCCTTACAGCAGTGTCTTATTAAAACGTACTAGACTCCTGCCATTTTAAATAATCTTAAATAAACCATCAAGCTTTAATCCAATTTAACCTGGACTCTTTTCCTAACTTAAATATTTAACTTTTCCTCATTCACATTCCAACTGAAACCTACTTAACGCTGTCTTAAGCCTTATATTACCACATTCCAACCCTCAGGGTTACACCTTCACGTAATCACTCCTTCCACTGCTCCCTGTGCTTGTTTACTTCCTCCTTCTTCCCCTTTACCTCTAGGCTCCTTCCTCCCaacccccaccctccaccacaCTGCCTATTTGCAGATGCAGGTGGAGGTCTAGGAGCTGATGATCTGTCCAGACCAGGTCTCATGCTTGGTTCCTGGGGCCAAGTGGGTGATGACAACCTCCATTGCCTGGATCTTCTGGTTCTTGGGGGGGATGGAACAGACTTTGTACGTGACCTCGTCACCTTCCATGGGCACGTATTCTCCATCGATACTAaaaaagggagagggggggaacaTTATGAGAGAATCCAGGCCTCTTTAGGTCTAGGACATTAAAG

Function

NR:

description
PREDICTED: cold shock domain-containing protein C2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1914827 True 1145 lncRNA 0.38 2 21634804 21636028

Neighbor

gene id symbol gene type direction distance location
phf5a LOC102780084 coding downstream 38286 21589006 ~ 21596518 (-)
LOC110498762 LOC106589530 coding downstream 138369 21444791 ~ 21496435 (-)
LOC110499102 LOC106589526 coding downstream 233490 21386313 ~ 21401314 (-)
LOC110499589 NA coding downstream 412967 21219435 ~ 21221837 (-)
LOC110499105 LOC106589523 coding downstream 420552 21191611 ~ 21214252 (-)
LOC110499092 kcd17 coding upstream 50716 21685612 ~ 21701763 (-)
trnar-ccu-54 NA coding upstream 74092 21710120 ~ 21710192 (-)
LOC110499087 LOC106589541 coding upstream 120559 21684993 ~ 21786204 (-)
maff LOC106589545 coding upstream 260677 21896705 ~ 21902217 (-)
shisa9a shisa9 coding upstream 568964 22204992 ~ 22252446 (-)
G1673611 LOC105025086 non-coding downstream 422 21627821 ~ 21634382 (-)
G1673608 NA non-coding downstream 12154 21622443 ~ 21622650 (-)
G1673606 NA non-coding downstream 14460 21619807 ~ 21620344 (-)
G1673600 NA non-coding downstream 20579 21612227 ~ 21614225 (-)
G1673521 NA non-coding downstream 135619 21480460 ~ 21499185 (-)
G1673650 NA non-coding upstream 90656 21726684 ~ 21729350 (-)
G1673719 LOC106589538 non-coding upstream 177222 21813250 ~ 21814027 (-)
G1673745 NA non-coding upstream 209923 21845951 ~ 21848428 (-)
G1672649 dhx8 other downstream 904732 20729275 ~ 20730072 (-)
G1672588 NA other downstream 964387 20620742 ~ 20670417 (-)
G1672381 LOC106589294 other downstream 1383639 20249459 ~ 20251165 (-)
G1671895 LOC107575789 other downstream 2199763 19432139 ~ 19435041 (-)
G1673740 LOC106589538 other upstream 200305 21836333 ~ 21844793 (-)
G1674299 NA other upstream 695322 22331350 ~ 22331806 (-)
LOC118942052 mkl2 other upstream 750295 22386323 ~ 22391573 (-)
LOC110499164 litaf other upstream 755789 22391641 ~ 22395025 (-)
G1674481 LOC106613263 other upstream 760881 22396909 ~ 22397223 (-)

Expression


Co-expression Network