G1673369


Basic Information

Item Value
gene id G1673369
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21676314 ~ 21682360 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1914530
tccttgtatgagctgaaagtttagtgggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1914530 True 300 lncRNA 0.44 2 21676314 21682360

Neighbor

gene id symbol gene type direction distance location
csdc2a LOC106589535 coding upstream 40279 21627905 ~ 21636035 (+)
LOC110499095 LOC106589533 coding upstream 62083 21594881 ~ 21614231 (+)
LOC110499096 LOC106589531 coding upstream 89906 21573035 ~ 21586408 (+)
LOC110499098 NA coding upstream 113741 21518345 ~ 21562573 (+)
LOC118941998 NA coding upstream 159049 21496394 ~ 21517265 (+)
cby1 cby1 coding downstream 28151 21710511 ~ 21721556 (+)
LOC110499089 LOC106589537 coding downstream 43188 21725548 ~ 21729360 (+)
sh3bp1 LOC106589540 coding downstream 57600 21739960 ~ 21755576 (+)
tnrc6b LOC106589538 coding downstream 124343 21806703 ~ 21848442 (+)
LOC110499080 LOC106609470 coding downstream 185474 21867834 ~ 21876459 (+)
G1673334 NA non-coding upstream 52879 21623208 ~ 21623435 (+)
G1673333 NA non-coding upstream 54633 21621451 ~ 21621681 (+)
G1673251 NA non-coding upstream 139596 21478632 ~ 21536718 (+)
LOC110499100 LOC106589528 non-coding upstream 252859 21422168 ~ 21437402 (+)
G1673166 NA non-coding upstream 292705 21382739 ~ 21383609 (+)
G1673341 kcd17 non-coding downstream 18711 21701071 ~ 21701804 (+)
G1673434 NA non-coding downstream 122196 21804556 ~ 21804932 (+)
G1673748 NA non-coding downstream 170452 21852812 ~ 21853020 (+)
G1673749 NA non-coding downstream 170720 21853080 ~ 21853290 (+)
G1673231 LOC106589530 other upstream 225968 21444883 ~ 21450346 (+)
G1673204 NA other upstream 286536 21386329 ~ 21389778 (+)
G1673063 NA other upstream 358902 21316798 ~ 21317412 (+)
G1673044 NA other upstream 379460 21296372 ~ 21296854 (+)
LOC110513322 rsl1d1 other downstream 254282 21936590 ~ 21959627 (+)
LOC110499192 LOC106589579 other downstream 1574444 23252800 ~ 23269058 (+)
faap100 faap100 other downstream 1897670 23576429 ~ 23582556 (+)
G1677419 LOC100194703 other downstream 3400304 25082664 ~ 25083277 (+)

Expression


Co-expression Network