G1674319


Basic Information

Item Value
gene id G1674319
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22388466 ~ 22391636 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1915604
TCTTTCTACCTGGCATATCATGTCAAACGACTTTAGTAGTACTCAGCATCTCAATCCAAATATTATTCTGATCAATATTGTATAGAACTAATACGGTTGTACTGTATAGCACTTTGGAATATCATGGCTTTATTTTGATGTTTGAACAATCATTCTTATCCAACAAGTCAAACACTAAGGATAACATATAGGCAGGTAATAATGCCAAATACTGTCCACACTGTCTGTTACCATTAGGAACCAGATGCTTGTAACTGTGGTTTAGGGCTATCAaggaattatttgtttttcaattgTTGCCTAATAAGGCAGTGAAACATTGGTGAAAATCTATTGTTGCcacttttttaaaattgtatttatcacattTTTGTGTTCTGAAATCCAATAGTTTTTTCTGTATATATGCAAGAGGAAGAttactgtaaatgttttttttttaccacccATACCAGAAATATATGGCCAAAAGCATCTATATACATGGGTATGCTGTAAAATATGACGGTTGGATTCTAAAACATTTAGATTCTGAATCATGTCAAACCTGTGTACTACTACTGTTAATAGGATGTTAGTGAAGCAATAAGGCCATAGCCTTACACTTACAGCACTGGTTCATTTGTGTTGTCGCTATCTCATAACAAGATGTCATCGTGTTGATCATTGCAAGCGGATCTTGATTTCGGCCTTACCTAATTCTGTGTCTTCTGTATGGTACTTGTCTCCCGTTCAACCCTGGTTCTTTGTCTGAAatgtaactacactgaacaaaagtgTAAAcgcaacattttcaaagattttagttcatataaggaaatccgtcaattgaaatacattcactaGGCCCtactctatggatttcacatgactgggaataagaTGTGTATCTGTTggccacagataccttaaaaaaggtaggggtgtggatcagaaaaccagtcagtatctggtgtgaccaccatttgcctcaggcagcatgacacatctccttcacatagagttgatcaggctgttgattggggcatgttgtcccactcctctggatattggtgggaactggaacatgctgtcatacacatcGATCCATAGCATCCCAaaaatgctcaatgggtgacctgtctgagtatgcaggtcatgtaggaactgggacattttcagtttccagaaattgtgtacagatctttcTGACAGGGGCTGTgtattttcatgctgaaacatgaggtgatggtggcacgACAATGAGCCGCaggatctctgtgcattcaaattgcaatcaataaaatgcaattgtgttcgttgtccatagcttatgcctgcccataccttaaccccaccaccaccatggggtactctgttcacaacgttgacatcagaaaacctcTAACTCACACATCGGCCATgtacccggtacagttgaaaccttGATTCAACCATGATTAGCACCAGTGGGAATCGAGGGTGCGCCTTTGCCCACTGCAGTCTTTTACGACgcccaaactgcagtcaggtcaagactctGAGCACACTGATGAGCTTTCCTGAGACGATTTATGACCTTAAGGTCAGAAATTATTCGGTTGTTCAGACCCGCAATTTCTTCAGCTGTCcggttggctggtctcagacggttacgcaggtgaagaagcggatgtggaggtcctgggctggcgtggttacacctggtctaaccggatgtggaggtcctgggctggcgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaaccggatgtggaggtcctgggctggcgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaaccggatgtggaggtcctgggctggtgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaaccggatgtggaggtcctgggctggcgtggttacacctggtctaactggatgtggaggtcctgggctggtgtggttacacctggtctaaccggatgtggaggtcctgggctggtgtggttacacctggtctaactggatgtggaggtcctgggctggtgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaactggatgtggaggtcctgggctggtgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaactggacgtggaggtcctgggctggcgtggttacacctggtctgtgcttgtgaggccggttgccaaattctctaaaacgacgtttaggccgcttatggtagagaaattaacgttCCATTCTCTGACAACCGCCctggtggacattccagcagtccgcatgccaattgcacgctccctcaaaacttgactgCAAATTTCagagtggacttttattgtccccagcacaagatgcaccttagtaatgatcatgctgtttaaccagcttcttgatatgccacacctgtcaggtggatggagtattttggcaaaggagaaatgctcagtaacacaacatttgagagagatAAGCTTttggtgtgtatggaacatttctgcaatcttttatttcagctcatgaaacatgggaccaacattttatatgttgtgttttatatttttgttcagtgtagtaagacatttgccccccccc
>TU1915605
TCTTTCTACCTGGCATATCATGTCAAACGACTTTAGTAGTACTCAGCATCTCAATCCAAATATTATTCTGATCAATATTGTATAGAACTAATACGGTTGTACTGTATAGCACTTTGGAATATCATGGCTTTATTTTGATGTTTGAACAATCATTCTTATCCAACAAGTCAAACACTAAGGATAACATATAGGCAGGTAATAATGCCAAATACTGTCCACACTGTCTGTTACCATTAGGAACCAGATGCTTGTAACTGTGGTTTAGGGCTATCAaggaattatttgtttttcaattgTTGCCTAATAAGGCAGTGAAACATTGGTGAAAATCTATTGTTGCcacttttttaaaattgtatttatcacattTTTGTGTTCTGAAATCCAATAGTTTTTTCTGTATATATGCAAGAGGAAGAttactgtaaatgttttttttttaccacccATACCAGAAATATATGGCCAAAAGCATCTATATACATGGGTATGCTGTAAAATATGACGGTTGGATTCTAAAACATTTAGATTCTGAATCATGTCAAACCTGTGTACTACTACTGTTAATAGGATGTTAGTGAAGCAATAAGGCCATAGCCTTACACTTACAGCACTGGTTCATTTGTGTTGTCGCTATCTCATAACAAGATGTCATCGTGTTGATCATTGCAAGCGGATCTTGATTTCGGCCTTACCTAATTCTGTGTCTTCTGTATGGTACTTGTCTCCCGTTCAACCCTGGTTCTTTGTCTGAAatgtaactacactgaacaaaagtgTAAAcgcaacattttcaaagattttagttcatataaggaaatccgtcaattgaaatacattcactaGGCCCtactctatggatttcacatgactgggaataagaTGTGTATCTGTTggccacagataccttaaaaaaggtaggggtgtggatcagaaaaccagtcagtatctggtgtgaccaccatttgcctcaggcagcatgacacatctccttcacatagagttgatcaggctgttgattggggcatgttgtcccactcctctggatattggtgggaactggaacatgctgtcatacacatcGATCCATAGCATCCCAaaaatgctcaatgggtgacctgtctgagtatgcaggtcatgtaggaactgggacattttcagtttccagaaattgtgtacagatctttcTGACAGGGGCTGTgtattttcatgctgaaacatgaggtgatggtggcacgACAATGAGCCGCaggatctctgtgcattcaaattgcaatcaataaaatgcaattgtgttcgttgtccatagcttatgcctgcccataccttaaccccaccaccaccatggggtactctgttcacaacgttgacatcagaaaacctcTAACTCACACATCGGCCATgtacccggtacagttgaaaccttGATTCAACCATGATTAGCACCAGTGGGAATCGAGGGTGCGCCTTTGCCCACTGCAGTCTTTTACGACgcccaaactgcagtcaggtcaagactctGAGCACACTGATGAGCTTTCCTGAGACGATTTATGACCTTAAGGTCAGAAATTATTCGGTTGTTCAGACCCGCAATTTCTTCAGCTGTCcggttggctggtctcagacggttacgcaggtgaagaagcggatgtggaggtcctgggctggcgtggttacacctggtctaaccggatgtggaggtcctgggctggcgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaaccggatgtggaggtcctgggctggcgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaaccggatgtggaggtcctgggctggtgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaaccggatgtggaggtcctgggctggcgtggttacacctggtctaaccggatgtggaggtcctgggctggtgtggttacacctggtctaactggatgtggaggtcctgggctggcatggttacacctggtctaaccggatgtggaggtcctgggctggtgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaactggatgtggaggtcctgggctggtgtggttacacctggtctaaccggatgtggaggtcctgggctggcgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaactggatgtggaggtcctgggctggtgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaactggacgtggaggtcctgggctggcgtggttacacctggtctgtgcttgtgaggccggttgccaaattctctaaaacgacgtttaggccgcttatggtagagaaattaacgttCCATTCTCTGACAACCGCCctggtggacattccagcagtccgcatgccaattgcacgctccctcaaaacttgactgCAAATTTCagagtggacttttattgtccccagcacaagatgcaccttagtaatgatcatgctgtttaaccagcttcttgatatgccacacctgtcaggtggatggagtattttggcaaaggagaaatgctcagtaacacaacatttgagagagatAAGCTTttggtgtgtatggaacatttctgcaatcttttatttcagctcatgaaacatgggaccaacattttatatgttgtgttttatatttttgttcagtgtagtaagacatttgccccccccc
>TU1915606
TCTTTCTACCTGGCATATCATGTCAAACGACTTTAGTAGTACTCAGCATCTCAATCCAAATATTATTCTGATCAATATTGTATAGAACTAATACGGTTGTACTGTATAGCACTTTGGAATATCATGGCTTTATTTTGATGTTTGAACAATCATTCTTATCCAACAAGTCAAACACTAAGGATAACATATAGGCAGGTAATAATGCCAAATACTGTCCACACTGTCTGTTACCATTAGGAACCAGATGCTTGTAACTGTGGTTTAGGGCTATCAaggaattatttgtttttcaattgTTGCCTAATAAGGCAGTGAAACATTGGTGAAAATCTATTGTTGCcacttttttaaaattgtatttatcacattTTTGTGTTCTGAAATCCAATAGTTTTTTCTGTATATATGCAAGAGGAAGAttactgtaaatgttttttttttaccacccATACCAGAAATATATGGCCAAAAGCATCTATATACATGGGTATGCTGTAAAATATGACGGTTGGATTCTAAAACATTTAGATTCTGAATCATGTCAAACCTGTGTACTACTACTGTTAATAGGATGTTAGTGAAGCAATAAGGCCATAGCCTTACACTTACAGCACTGGTTCATTTGTGTTGTCGCTATCTCATAACAAGATGTCATCGTGTTGATCATTGCAAGCGGATCTTGATTTCGGCCTTACCTAATTCTGTGTCTTCTGTATGGTACTTGTCTCCCGTTCAACCCTGGTTCTTTGTCTGAAatgtaactacactgaacaaaagtgTAAAcgcaacattttcaaagattttagttcatataaggaaatccgtcaattgaaatacattcactaGGCCCtactctatggatttcacatgactgggaataagaTGTGTATCTGTTggccacagataccttaaaaaaggtaggggtgtggatcagaaaaccagtcagtatctggtgtgaccaccatttgcctcaggcagcatgacacatctccttcacatagagttgatcaggctgttgattggggcatgttgtcccactcctctggatattggtgggaactggaacatgctgtcatacacatcGATCCATAGCATCCCAaaaatgctcaatgggtgacctgtctgagtatgcaggtcatgtaggaactgggacattttcagtttccagaaattgtgtacagatctttcTGACAGGGGCTGTgtattttcatgctgaaacatgaggtgatggtggcacgACAATGAGCCGCaggatctctgtgcattcaaattgcaatcaataaaatgcaattgtgttcgttgtccatagcttatgcctgcccataccttaaccccaccaccaccatggggtactctgttcacaacgttgacatcagaaaacctcTAACTCACACATCGGCCATgtacccggtacagttgaaaccttGATTCAACCATGATTAGCACCAGTGGGAATCGAGGGTGCGCCTTTGCCCACTGCAGTCTTTTACGACgcccaaactgcagtcaggtcaagactctGAGCACACTGATGAGCTTTCCTGAGACGATTTATGACCTTAAGGTCAGAAATTATTCGGTTGTTCAGACCCGCAATTTCTTCAGCTGTCcggttggctggtctcagacggttacgcaggtgaagaagcggatgtggaggtcctgggctggcgtggttacacctggtctaaccggatgtggaggtcctgggctggcgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaaccggatgtggaggtcctgggctggcgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaaccggatgtggaggtcctgggctggtgtggttacacctggtctaactggatgtggaggtcctgggctggcgtggttacacctggtctaactggacgtggaggtcctgggctggcgtggttacacctggtctgtgcttgtgaggccggttgccaaattctctaaaacgacgtttaggccgcttatggtagagaaattaacgttCCATTCTCTGACAACCGCCctggtggacattccagcagtccgcatgccaattgcacgctccctcaaaacttgactgCAAATTTCagagtggacttttattgtccccagcacaagatgcaccttagtaatgatcatgctgtttaaccagcttcttgatatgccacacctgtcaggtggatggagtattttggcaaaggagaaatgctcagtaacacaacatttgagagagatAAGCTTttggtgtgtatggaacatttctgcaatcttttatttcagctcatgaaacatgggaccaacattttatatgttgtgttttatatttttgttcagtgtagtaagacatttgccccccccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1915604 False 2819 lncRNA 0.46 2 22388466 22391636
TU1915605 False 2907 lncRNA 0.46 2 22388466 22391636
TU1915606 True 2423 lncRNA 0.44 2 22388466 22391636

Neighbor

gene id symbol gene type direction distance location
mrtfba mkl2 coding upstream 21 22347917 ~ 22388445 (+)
ercc4 ercc4 coding upstream 40709 22340729 ~ 22347757 (+)
cpped1 cpped1 coding upstream 69742 22252131 ~ 22318724 (+)
LOC118942051 NA coding upstream 106623 22260747 ~ 22281843 (+)
snx29 snx29 coding upstream 296886 21974338 ~ 22091580 (+)
foxj1b LOC106589554 coding downstream 69604 22461240 ~ 22465079 (+)
zgc:163057 hbad coding downstream 169813 22561449 ~ 22562880 (+)
LOC110499167 LOC106589556 coding downstream 180091 22571727 ~ 22572592 (+)
LOC110499592 LOC106589557 coding downstream 182906 22574542 ~ 22575413 (+)
LOC118942010 LOC106589557 coding downstream 191180 22582816 ~ 22583667 (+)
G1674292 NA non-coding upstream 60898 22327365 ~ 22327568 (+)
G1674263 NA non-coding upstream 82502 22305719 ~ 22305964 (+)
G1674261 NA non-coding upstream 82977 22305227 ~ 22305489 (+)
G1674259 NA non-coding upstream 84235 22304020 ~ 22304231 (+)
G1674254 NA non-coding upstream 88058 22300189 ~ 22300408 (+)
G1674331 NA non-coding downstream 5384 22397020 ~ 22397239 (+)
G1674333 NA non-coding downstream 8692 22400328 ~ 22400573 (+)
G1674339 NA non-coding downstream 14304 22405940 ~ 22406284 (+)
G1674343 NA non-coding downstream 18353 22409989 ~ 22410212 (+)
G1674321 LOC106589553 non-coding downstream 23278 22414914 ~ 22418894 (+)
LOC110513322 rsl1d1 other upstream 428839 21936590 ~ 21959627 (+)
tnrc6b LOC106589538 other upstream 542600 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 938120 21444883 ~ 21450346 (+)
LOC110499100 LOC106589528 other upstream 951085 21422168 ~ 21437402 (+)
G1673204 NA other upstream 998688 21386329 ~ 21389778 (+)
LOC110499192 LOC106589579 other downstream 865168 23252800 ~ 23269058 (+)
faap100 faap100 other downstream 1188394 23576429 ~ 23582556 (+)
G1677419 LOC100194703 other downstream 2691028 25082664 ~ 25083277 (+)
G1677738 NA other downstream 3245055 25636691 ~ 25641614 (+)
G1678963 NA other downstream 4070558 26462194 ~ 26467953 (+)

Expression


Co-expression Network