G1674321 (LOC106589553)


Basic Information

Item Value
gene id G1674321
gene name LOC106589553
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22414914 ~ 22418894 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1915611
TACTTTATTCAATTTAAATAACCCAATGACAACAGAACTGAATGGGGCCGACCCTGCATGTGAATATTGCCTTGAATCAATGCCTTTCATAGCCTGCTATAGGCAGGATCACAGTGCACGGGATGCCCAGTTGTATAATGCTGCAATACAAATGATACACCAGAGGGAATGGAAAACACCATGTAgaccgtcattgtgaataagaatttgttcttaactgacgtgcctagtaaaataaaggttcaaatgtaGTATCCCCTACCCCCACAGCCAGAAACACATCTCGGTTTCATGTACGTTTGCTACAAAAAAACAGTATACATTATGAGCACATCATGCAAAGTGGCAAGTTCTGCTTTACAAATAGTATAGTAGTCTGTTTTTTCTCCTCGCCGATCAGCTCTTCCCAAACACAACCTAAAGAAACCCCGCCCACTCCCAAATCCCACCCAccaagaaaaaaaacatattaaACTATAATATATCAAACCATGATTTTTATATAATACCCAAATCTGCAGAAACCTTGCAGTGGACAGTTCTATCTTCCAGACCAGGTTAATAGGAAAGCATCACCCCTCGTTGGAAAGAAAAGCTATAGCAGTGAACAATATCATCGTCAACATGAGCAAATACCAGAGCTGAAAAATcacaattgtttaaaaaaaaaaaaagtcctgtGTTGTCAAACAGTTGAGAATCCCTGATAGGCTGAAAGAAGTCAGGTGACGACTAGGTGAGGTAAGAAGAGTCCCATCTTACGATGGGTAATGAAAACTAGGTTGCTGTTTCTTCTGCTCTGCAAACACGTTCGTGATGAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGAAGTGTACACACTCTTTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACCACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACCACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACCACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTA
>TU1915608
CTCTCCATGCAGTGTACACACTCTTTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACCACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACCACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACCACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTA
>TU1915610
CTCTCCATGCAGTGTACACACTCTTTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACCACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACCACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACCACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCTATGCAGTGTACACACCACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACCACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTTTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTTTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTGTACTGCCAGATCCCCTCTCTCCATGCAGTGTACACACTCTCTATAACATGTTCCTAGTAGAGTATAAACACTTGgacagatgaaaagagagagcagAAACAGTTGCTGCTTTAAGTCCTTGTCTCAGAAAACATCAGAAGTATAATCCTTGGACTTGAAGATGTTTTGTTCCATACATTTCTCTTATCTATGCATTTACTGAGAATATTTTTTTCTAAACAAAGATTTCAGTTGCTCTCTTTCTTATTACTAAGTGTGTGcgcttcttaaaaaaaaaaagtttgatttCTTATTTGCATTGTTTCCACTTCTTGAATTGTCCACGTTTAGTACTTGCTTGGTTTTTCTTGGTTTGTGTAGCTGTCTCTATCTCCACCCTACCACCCTCAATTGGAAAGAGACACACCttcacttcccccccccccccccccccagggccgTCTAGTCCTGGCCCCTCATCTCTCGGCCTCCATGGCCACACTCGCCTTCTGTTCGGTGGCTGGGTGCTGGTGGGGGTTAACGGTGACCCCCGTGGGCCAGACTGCGGGGTTGGAGGGGGGCTGCGAAGGGGGCTGCCCCTGAGTCCAGAGTCCCTGACCCTGTGGACCACTCATGGGCATGGGGAGTGGGGGCACGCCCCAGCAACCgtgtggaggagggggagaggtggccATGGAGGCCATGGGGCTGCTGGAGGTGAAGCTCTCTGAAGCCTTGAGACGGGAGAACATGGTGAGGGCATCAGGGAAGTTGGGCGGGGTGGCCGGTGT

Function

NR:

description
UBA-like domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1915611 False 1406 lncRNA 0.42 2 22414914 22416760
TU1915608 False 553 lncRNA 0.44 2 22416062 22416760
TU1915610 True 2166 lncRNA 0.46 2 22416062 22418894

Neighbor

gene id symbol gene type direction distance location
mrtfba mkl2 coding upstream 26469 22347917 ~ 22388445 (+)
ercc4 ercc4 coding upstream 67157 22340729 ~ 22347757 (+)
cpped1 cpped1 coding upstream 96190 22252131 ~ 22318724 (+)
LOC118942051 NA coding upstream 133071 22260747 ~ 22281843 (+)
snx29 snx29 coding upstream 323334 21974338 ~ 22091580 (+)
foxj1b LOC106589554 coding downstream 42346 22461240 ~ 22465079 (+)
zgc:163057 hbad coding downstream 142555 22561449 ~ 22562880 (+)
LOC110499167 LOC106589556 coding downstream 152833 22571727 ~ 22572592 (+)
LOC110499592 LOC106589557 coding downstream 155648 22574542 ~ 22575413 (+)
LOC118942010 LOC106589557 coding downstream 163922 22582816 ~ 22583667 (+)
G1674343 NA non-coding upstream 4702 22409989 ~ 22410212 (+)
G1674339 NA non-coding upstream 8630 22405940 ~ 22406284 (+)
G1674333 NA non-coding upstream 14341 22400328 ~ 22400573 (+)
G1674331 NA non-coding upstream 17675 22397020 ~ 22397239 (+)
G1674319 NA non-coding upstream 23278 22388466 ~ 22391636 (+)
G1674386 NA non-coding downstream 58741 22477635 ~ 22477851 (+)
G1674387 NA non-coding downstream 59108 22478002 ~ 22478209 (+)
G1674390 NA non-coding downstream 62518 22481412 ~ 22481707 (+)
G1674393 NA non-coding downstream 66164 22485058 ~ 22485285 (+)
LOC110513322 rsl1d1 other upstream 455287 21936590 ~ 21959627 (+)
tnrc6b LOC106589538 other upstream 569048 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 964568 21444883 ~ 21450346 (+)
LOC110499100 LOC106589528 other upstream 977533 21422168 ~ 21437402 (+)
G1673204 NA other upstream 1025136 21386329 ~ 21389778 (+)
LOC110499192 LOC106589579 other downstream 837910 23252800 ~ 23269058 (+)
faap100 faap100 other downstream 1161136 23576429 ~ 23582556 (+)
G1677419 LOC100194703 other downstream 2663770 25082664 ~ 25083277 (+)
G1677738 NA other downstream 3217797 25636691 ~ 25641614 (+)
G1678963 NA other downstream 4043300 26462194 ~ 26467953 (+)

Expression


Co-expression Network