G1674398


Basic Information

Item Value
gene id G1674398
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22490798 ~ 22492131 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1915694
CAAACACTCACCACCACTTAGACAGCAGTACACATGTTAACCTACAAGTGTTTTGTCTAGTGTAATATAGGGCACAcatgacacactattccctatatagttcactgtACAGAGCAGTGGTTACCCAAGGGGGGGGTGAGGGGTCggcagccccccccccaaacaaaaaaCACTTGTAATTTGTAATAGTTGAATGCAAAAGGTGCATTTTCGatattgggtagtgcatcattagtttctcttgtcatgtcagtcattgcatacaTTAGAGAGCTATTTCTAACCTATTTATAACTAAcccatgtcagctaatgttttttagcccatagattttgttgtaattttttagttactcaaatatcacatgaatacacattaggcTCTGCAAAATGTctataattgcaggaaataagcgtTTACAACTCtctgccaacaagaggggtgtgaacacttgGTGTCATGAACAATGCTTGTGCCATTGTGAGAtgagtgaaaaagtttgggaacctctggtatagagaatagtgtgccatttgagactTGGACCTAGATATGGCAGTAATAACCAAGGCACCAGAGGCAGTCATCGTACAGTACTACAGGAATCCCTTTTCTTTCCTGTGAGATAGTTCCCTGTCTGAGGTCATCCAATAAACCAATACAACTTTTCGTCAGCTTTATGACGTGTGtagaaaaatacaaaacaaaatcccTCCACAGCTGTATGTGGTCTGACGGCCACAAGGTGGTGCTGTTGTGTCTGTTTTTAATAAGAGCAGCGGCAAGGCAACAGTCACATTTAACCCCCCCTTCTGTCTTTAAGTCTTTATGCTTTGAAAGTGACAGGTCACTCGCTAGCAATGTCCATATAAACAAAATCAAATGGAGACAGATCAACAGTTATTAAGATCAACAGTTATTTTTCCAAGATTGGCAATCTTCACATCCAATGTCCTGAATACTACAACAAATATGGCCGCCGGTCTGGTCCATGCCGTGACGTTGCTTAGAGTCTTGTTCACCAGCCGACCCTTTTGTCCTGCTATCCTGGCGCGTGAGGCTATAGTTCTTTGAGATTGTCCATTCTAGTCATTGCAATTGTACAGTCAAAGGCCTGGTCAGTGGAGGTGGGCGTTGAGGTCGTACTTGTCACAGAACTTGTCAGTGAGGGGAATACAGGTGAGGTACTCACACCACTCACACTTGACCGGGTGTATGTAGAACAGTACAGCCAGTCCTGAGAAGAGACCCAGGAACACCAACAGGAACACACAGATCTGGACACGCTTACGGTACATGTCCGAACGGC

Function

NR:

description
inactive rhomboid protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1915694 True 1309 lncRNA 0.43 2 22490798 22492131

Neighbor

gene id symbol gene type direction distance location
foxj1b LOC106589554 coding upstream 25719 22461240 ~ 22465079 (+)
mrtfba mkl2 coding upstream 102353 22347917 ~ 22388445 (+)
ercc4 ercc4 coding upstream 143041 22340729 ~ 22347757 (+)
cpped1 cpped1 coding upstream 172074 22252131 ~ 22318724 (+)
zgc:163057 hbad coding downstream 69318 22561449 ~ 22562880 (+)
LOC110499167 LOC106589556 coding downstream 79596 22571727 ~ 22572592 (+)
LOC110499592 LOC106589557 coding downstream 82411 22574542 ~ 22575413 (+)
LOC118942010 LOC106589557 coding downstream 90685 22582816 ~ 22583667 (+)
LOC110499593 LOC106589557 coding downstream 98972 22591103 ~ 22591954 (+)
G1674393 NA non-coding upstream 5513 22485058 ~ 22485285 (+)
G1674390 NA non-coding upstream 9091 22481412 ~ 22481707 (+)
G1674387 NA non-coding upstream 12589 22478002 ~ 22478209 (+)
G1674386 NA non-coding upstream 12947 22477635 ~ 22477851 (+)
G1674404 rhbl4 non-coding downstream 4334 22496465 ~ 22496791 (+)
G1674409 NA non-coding downstream 11992 22504123 ~ 22505126 (+)
G1674434 NA non-coding downstream 48791 22540922 ~ 22541149 (+)
G1674441 NA non-coding downstream 58370 22550501 ~ 22550771 (+)
G1674446 NA non-coding downstream 64853 22556984 ~ 22557210 (+)
LOC110513322 rsl1d1 other upstream 531171 21936590 ~ 21959627 (+)
tnrc6b LOC106589538 other upstream 644932 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 1040452 21444883 ~ 21450346 (+)
LOC110499100 LOC106589528 other upstream 1053417 21422168 ~ 21437402 (+)
G1673204 NA other upstream 1101020 21386329 ~ 21389778 (+)
LOC110499192 LOC106589579 other downstream 764673 23252800 ~ 23269058 (+)
faap100 faap100 other downstream 1087899 23576429 ~ 23582556 (+)
G1677419 LOC100194703 other downstream 2590533 25082664 ~ 25083277 (+)
G1677738 NA other downstream 3144560 25636691 ~ 25641614 (+)
G1678963 NA other downstream 3970063 26462194 ~ 26467953 (+)

Expression


Co-expression Network