G1674565


Basic Information

Item Value
gene id G1674565
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22564295 ~ 22568906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1915889
TTTATGCTTGTGATTTCAACAAATTATATACACTTGGGATCAGTaccgattttagcatgtaaaaaaaaattgggaCGCATTCCAGCAAAGCcacgacacaacacaacactaaacaatacactaattgcactataccactgctacacctggctagcggagccttgtctggcagcgaaacagttaattcagcctcatttactgacttgcttaaacaaatgtggtttctactgacaattgagatgcacAAACTATTGCATAAGGTGacgacaagcagataagaggcagtcCTTAATTTCGATTTagacattaatgagtgagctaggacggaagtagtcaatataactacttgttcagcacttttgaaatgtacaatgacagaattcagaacataggccgttcttacagtgttcttctccctgtacaccaagtcagaaccataggataaataaagggggcatataagcagacaatgaaagctcttacaatattcaatgattacatttctcaaaatcaggttataggctacagtacatgtgcaccaccaagtcagaacactaggcaaaattaagaggtgaaaatataccaaattattagggtgaggcaaaTGGGCTACCAACAGTTTACTGCAATATACAAtttgtattactttcttagctacagtatacagtaccaggcaaaagtttggacacacctacctactcattcaagggtttttctttatttttactattttctacattgtagaataataatgaagacgtcaaaactatgaaataacacatatggaatcatgtagtaaccaaaaatgttttaaacaaatcaaactatattttatatttgagattcttcaaagtagccaccctttgtctagatgacagctttgcacactcttggcattctctcaaccagcttcacttggaaggcttttccaacagtcttgaaggagttcccacatatgctgagcacttgtttgctgcttttccttcactctgcggtccaacttgtcccaaaccatctcaattgggttgaagtcaggtgattgtggaggcaaggtcatcaaattttgtcatcaaactttgtcatcaaagtctgacattctctggatttatggtgctttcaagacaactgggggaAAAAAAGAAGATTCAATCacgatgacgtcagtgatcttcaggtcatagctctagaaagaggcccgagttcccgatttacaattccgagttggatgaaagttcaaacgtattttcccagtcataCCTCGTTTTCCCCAAGTACCCAGTTATTTTGAATTTACTAAAGTCAGATTTTGTAGTTCTAAgataacagttgttttgagtgcagcacaaatcatgcttcattgacagcatggccaatgttgaatgtttataattttaaactaggaaaagagacccttaatcttagacttgggaccacacagccactgaatatcaggctaatgattgctttgcaatgcttgcagttagccactgattccttccaaatctCTCATTGGTGAacttgcaatttccaacttgttgtgtaatgtttatgttgaATGGCCGATGAGTACCGCTACGTTTTATctttaatttctcttcattatttctcttaatatgacaaggattaaaaatgaattgtcagtagattgtcgacttgattcatgatgatgactgctagctaagattttgaaagtatgatgttgacatgatcagtccaatcaaagctactgtagatataaggTGATTtcacgtcattttatctgtgaccaatgaccttgagccttcttggatgtgcacttctaatgtaactctatggcagcacccgaGGGGCTTGAATTGTCGAGCTCTACCCTCAGACTtggtggtgatgtagtgtccccatgagtgacagaaagctgagccaatcacagcgcaacgctccgtattttctgctggttTGCCCCacctgtcacatctgctcctgcaacgccctatactgctcatcctgtgtctccttaacctgccaccactcccccagtactctctccctctctctcagtgtgtgtgtgattgtgtgggcggagacaggtgtgctggagtcagagcagatccccaacagctgcaacctgttccataatcaagacctctacaaatactgaGCCCTGCCACTTCTACGCTGCCAGAtcataatctctgctcagtcagtctatgTTGCTAGCCATTTGTTACTATTCAGATCCTGTTATCCTGTTGTGCCTTGCCTGACGCTGTTTTCCTCTCCACTACAGTTCTGCCCACTCTGACTCCGGTCCCTGGAGGTGAGAgtggttacttcatcccagtctcctcgtctcagtctgctcttgggttcccctgttccaCTCCGCGTAACAGTACGATCTGGCCAAAGAGATGAACCCAGCAGACTCTGCTACTCTCCACCAAACACTCGTCGGGCTAAAGGCACCCTACTCGAGCAACATGACCAAGCCTTGAAGACCCTTCTGGAGTACATCAAGGAGTTTTAACAGAGCCTGTCTGACCTACAGGGCTGACCCATCGCCCAGAGCTCCAACCAGGTCTCCTACACTCGGGACCGTTTGTTCTGACTCCCGAGCGTTACGATGGCAAACTCGGAGCTTGCAGAGCCTTTTTGGTTTAATGTTCACTAGTATTTCAGCAACAGCCCTACTCTTATGCTAGCGAATGGGCCAAGTTTTCCTTTCTGATTGGCTGCCTCCATGGAGCAGCGCTTTCCTGGGCCACGGTGGTGTGGGAGAGACAGTCCCCCATCTGCTTCTCCTACTCCAGATTCACGGAGGAGATTAAGAAAGTCTTTGACCACCCGGTCTGTGGTAAGGATGCCGCTAAACGACTCCTGTCCCTCCGTCAAGGCCCCCATAGTGTTGCTGAGATGGCATGTGAGTTCCGCACCCTCGCCTCTGAGAGCGGCTGGAACGAGGAGGCCCTTCAGGGAGTGTTCCGGAACACGCTTACTGAGTCCCTCAAGGACGAGTTAGTGTCCAGGGATGAGCCTGATGGACTTGATGAACTCATCTCTCTCACTATCCACATCGACAACCATCTCCGTGAGCGTTGGAGGGAGAGGGTAGGTAGGGTTGCATGTCCCATAACATCTGCTTCAGTGCCTTGTCCTCCTTCTCCGACTGCATCCCATTCCCAGGCTCGTCCAGATCCTGAACCCATGCTGCTCGTCCGGGCCTGTCTCTCTCCAGAGGAGAGGCAATGACGAATCGCCGCTAGGAGCTGCCTATACTGTGGCCAGGTTGGTCACTTTGTCTCCACTTGTTCCCTGCGTCCAGCAAAAGAGGGGGCTCGGCAGTAGTGGGGGATATGCTGTTGAACCAAATcgcctgcccatcttccccaagTTCCCTGCTTGAAGGCAAACTTGTGTGGCAGAGCCAGGCTTTTCCTCTGTCTGCTCTCATCGATTCGGGCGCCGACGAGAGATTCCTGGACCGAGGTGTCATTACCCAGTTGATTCTGGACACTGTCCCACTCGATTCACCCCTCGATGCCAACGCTCTCAATGGACAGCTCCTCGCCCGTGTCTGTGAGAGGACCGTCCCTGTGTCTCTCTGGAAATTACCAGGAAAAGATTGATTTCCACATAATCGACTGTTTTACTCTCCCCTGGTTCTTGGCCATCCATGGTTAAAGCTACACAACCCACAGATTGACTGGACTGCCGGAAAGGTAACCACTTGGAGTTCATTTTGTCACTCTAATTGTTTACATTCTACCCTGCCTTGTCTGTGCCCCAGTTCATTCCAGAACCTCCGGAACTGTCATCAGTTCCTCTCGAGGATCACGATCTAGCTCCTGTGTTCAGAAAGCACAACGCCCTGTTGCTGCTTTCTCATCGGCCGTACGACTGCGCCATTGACCTCCAACCTGGAGCTCCTCTCCCCAGTAGCCGGTTGTTTAACCTCTCTCGTCCTGAGCAAGAGGCTATGGAGATGTACATCCAGGATTCTCTGGCTGCAGGTCTACTGCACCCTCCAACTTGAAGCAGCTACAGTATTTTCTGGGGTTTGCACATTTTTACAGACGTTTCATCCGCAACTACAGCCATCTGGCAGCACCTctcaccactcacctccacctccactctgTTCCACTGGACTCCTGAGGCAGAGGCAGCATTCCTGGAACTCAAGCATCTCTTTACCTCTGCTTCGGTCCTTACTCAGCCCGACCCAGAACTCCAGTTCATCATAGAGGTGGACGCCTCTGACACCGGGGTAGGTGCTGTTCTGTCTCAAAGTTCCCCCTCTGATCAGCAGGTCCACCCATGTGCATTATTTTCCTGTAAGCTCTCACCTGCAGAGAGGAATTTTGACATCGGAAACCGGGAACTCCTGGCAGTTACCCTGGCTCTGGAGGAATTGCGTCACTGGCTGTAGGGCTCTGTACTCCCCTTCATCGTGTGGACTGACCATAAAAACCTGTCCTACATCCAGACCGCCAAACATCTGAACTCCCGGCAATCCAGGTGGGCCTTGTTCTTTGGTAGATTCATGTCAAGTTCTTTCAAAATcaaacccagaagcagaccaggacaaggagagtaggaagaaggtgagtatttatttacaagtgaatgtgaa

Function

NR:

description
Retrotransposable element Tf2 protein type 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1915889 True 4612 lncRNA 0.47 1 22564295 22568906

Neighbor

gene id symbol gene type direction distance location
rhbdf1b LOC106589555 coding downstream 26593 22490738 ~ 22537702 (-)
ubald1a LOC106589553 coding downstream 118260 22414614 ~ 22446035 (-)
LOC110499164 litaf coding downstream 169270 22391641 ~ 22395025 (-)
LOC118942052 mkl2 coding downstream 174972 22386323 ~ 22391573 (-)
shisa9a shisa9 coding downstream 311849 22204992 ~ 22252446 (-)
aqp8a.2 aqp8 coding upstream 34690 22603596 ~ 22607933 (-)
aqp8a.1 LOC106589558 coding upstream 39805 22608711 ~ 22615064 (-)
lcmt1 lcmt1 coding upstream 60621 22629527 ~ 22639689 (-)
grid2ipb LOC106589205 coding upstream 131515 22700421 ~ 22715611 (-)
LOC110499178 NA coding upstream 169983 22738889 ~ 22739927 (-)
G1674564 hbad non-coding downstream 1403 22561393 ~ 22562892 (-)
G1674558 NA non-coding downstream 24257 22539839 ~ 22540038 (-)
G1674554 NA non-coding downstream 29798 22533350 ~ 22534497 (-)
G1674539 NA non-coding downstream 75580 22488427 ~ 22488715 (-)
G1674538 NA non-coding downstream 76243 22487641 ~ 22488052 (-)
G1674563 LOC106589556 non-coding upstream 2872 22571778 ~ 22572594 (-)
G1674762 NA non-coding upstream 112211 22681117 ~ 22683665 (-)
G1674767 NA non-coding upstream 120985 22689891 ~ 22691720 (-)
G1674768 NA non-coding upstream 126611 22695517 ~ 22697421 (-)
G1674770 NA non-coding upstream 129966 22698872 ~ 22699116 (-)
G1674481 LOC106613263 other downstream 167072 22396909 ~ 22397223 (-)
G1674299 NA other downstream 232489 22331350 ~ 22331806 (-)
G1673740 LOC106589538 other downstream 719502 21836333 ~ 21844793 (-)
G1674592 NA other upstream 22664 22591570 ~ 22601548 (-)
msrb1b LOC100705913 other upstream 266917 22835823 ~ 22837899 (-)
G1675801 LOC107699850 other upstream 288207 22857113 ~ 22864346 (-)
LOC118942011 NA other upstream 626059 23192192 ~ 23204089 (-)
G1676051 ccz1 other upstream 760991 23329897 ~ 23332080 (-)

Expression


Co-expression Network