G1674902


Basic Information

Item Value
gene id G1674902
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22950386 ~ 22952493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1916300
GTTGCAAACAAAACTCCACAGAAACAATGAACAGATGAAAAATAAGCATTTTAGCTGCAGTCAGAACCACAGCCTCTAATGGTGTCCATACCTCCGTCTATACATAAAGTATCAACACAGACAGACGTATGGAAACAcgtatactgtatatagcttctgaCCAGGAAATAATATTTCCCATAAATACCCTTTCAGTCATGATCCCAAACATTCAAGTATTTCTATCATTGCACAGGCACTAGGtttatctactgtatatatatgaaCTTTCAGTAACAGTAACTGAAATGTTTTCTCCAGCAAAGCAGATCTGCAGTTGGAAAGTTAAGAAATGTACATCCTGCATATCTGTAGACAACATTAACATCTGGACATCATACATACAATCACACCCTAAAGGAATATTCATCCTACAAAAATCTTGGTGTCACATTTGGCTTCTTAGTACCAAAATTGAGGACTGACTAAAGTTTCATCTTAAATTCATCCTCAAATAATAAATGAATCTATGGGCCAAAGAAAAATAAGAGGAAAGTACAATGGAGGATATGCTGTAGTGTGAATCACTTTGAATCGGATTCATTCTTGTCATTCAAACccgaaagggcctttcccaaactgttgcccctaaattggaagcacagaatcgtctaggatgtcattgtatgctgtagcgttaagattccccttcactggaactaaggggcctagcccgaaccatgaaaaacagccccagttaGCACTATCCATTGGGGcaagtagcattctcctggcatctgccaaacctagATTCgtcagtcggactgccagatggtgaagcctgccactttgtggctgagcctttgttgctcctagacttttccacttcacaataacagcacttacaattgaccgggacaaactgacttgttggaaaggtggcatcttatgacggtgcaacattgaaagtcactgagctccagtaaggccattctactgtcaatgtttgtctatggagattgcatggcggtgtgctcgattttatacacctgtcagcaatgggtgtggctgaaatagatgaacacactaatttgaaggggtgtccacatatatatatatatatatacacacacacaaaagtatctGCGGAGCGAGCGGGTTTGAGGGTCATcctattgtgtggatgaaggagGGGTGGGTGGCGAGCGGGTTGAATAATGAGGAAACAATGCATACAAAGATCCATAAATGTATCATTCTTGTTGAACGTATATCTACcggctacattgaggtttttccTTCATTCTTTTTAGGCTATCTGGCATTAGTGCCACCAAATAGCCTACAAGCCAATagccaaatgcttttgggaacggACAGAAAAAGTTAAAGTCGATCCACTGAGGCAAAAAGGATAATGTCGGAGTTTAATTGAATAAAATAAAAGCTGCGAAATGGAGAGTTGTTTAAGTGGTAAAGGAGTGTGCCGgctatgttatgtgtgatgattctttacattttatttaacctttatttaactaggcaagtcagtaaagaacaccccagctgacgctgggccaattgtgcgttgcccaatcacggctggttgtgatacagcctggaatcaaacaaGGGTCTGTAGTCACGCctctaccactgagatgcagtgcgttagaccgctgtgccactcgggaggccactcAAGGCGTGCATACAAATTCAACAGTCACAAGACCAGGACAAGTCAAtttaactgtagcctactgttcagatgggttaaatggaaactgaaatctggacactgactgtaggtctataaccttaCACATACccttaatattaactcctgcagaatgatgcatttcttgcagtaaaataatACACCAAATTCAAATGTATCCTACATTTTGACTCGGAAACAGGGGTGGAGAAATATGATTGATTTCTTAGAGCATCTTGAGAGAATCCGAATCTGCAGTTAGGGACCTTCTGTAGAGGTGCTAtttttatcagcatcataaaagctaaTAGGCCtagtatttcaaccacaggaggttggtggcacctaaaTTGCCATTCACACTGTTAGCATACAcccttctcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1916300 True 2083 lncRNA 0.41 2 22950386 22952493

Neighbor

gene id symbol gene type direction distance location
LOC110499185 LOC106589570 coding upstream 11471 22918884 ~ 22938915 (+)
LOC110499186 LOC106589571 coding upstream 33741 22914122 ~ 22916645 (+)
tex2l LOC106589568 coding upstream 85058 22841268 ~ 22865328 (+)
bricd5 LOC106589562 coding upstream 201487 22744224 ~ 22748899 (+)
pgp pgp coding upstream 206400 22741022 ~ 22743986 (+)
baiap2l1a LOC106589578 coding downstream 251270 23203763 ~ 23252161 (+)
LOC110499192 LOC106589579 coding downstream 300307 23252800 ~ 23269058 (+)
LOC110499196 prvt coding downstream 339538 23292031 ~ 23293827 (+)
LOC110499195 LOC106609864 coding downstream 342244 23294737 ~ 23297531 (+)
pvalb2 pvalb2 coding downstream 349200 23301693 ~ 23303981 (+)
G1674881 NA non-coding upstream 9680 22939309 ~ 22940706 (+)
G1674848 NA non-coding upstream 118046 22832119 ~ 22832340 (+)
G1674840 NA non-coding upstream 121590 22828567 ~ 22828796 (+)
G1674625 NA non-coding upstream 184954 22749085 ~ 22765432 (+)
G1674664 LOC106609649 non-coding upstream 244117 22705560 ~ 22706269 (+)
G1674912 NA non-coding downstream 16647 22969140 ~ 22969575 (+)
G1674940 NA non-coding downstream 49092 23001585 ~ 23005692 (+)
G1674946 NA non-coding downstream 57251 23009744 ~ 23010909 (+)
G1674951 NA non-coding downstream 63707 23016200 ~ 23016747 (+)
G1675016 NA non-coding downstream 162668 23115161 ~ 23117436 (+)
LOC110513322 rsl1d1 other upstream 990759 21936590 ~ 21959627 (+)
tnrc6b LOC106589538 other upstream 1104520 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 1500040 21444883 ~ 21450346 (+)
LOC110499100 LOC106589528 other upstream 1513005 21422168 ~ 21437402 (+)
G1673204 NA other upstream 1560608 21386329 ~ 21389778 (+)
faap100 faap100 other downstream 627537 23576429 ~ 23582556 (+)
G1677419 LOC100194703 other downstream 2130171 25082664 ~ 25083277 (+)
G1677738 NA other downstream 2684198 25636691 ~ 25641614 (+)
G1678963 NA other downstream 3509701 26462194 ~ 26467953 (+)

Expression


Co-expression Network