G1675385


Basic Information

Item Value
gene id G1675385
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 23744689 ~ 23745772 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1916841
gggagatcgCTTCTTCGCGTCTCTCCCCTGGCAGCCCAGCTGCCGTGCAGTCTGCAAGAACACTTGAACAGAGGTAATGGCGTTGTTTGGATATGGATAGGGCTACACAGCAATGAGAGAGGTAAAGCGCACGACTGGACCAGGACTGGATGGACCAGGGCAACGCGGGAGGATATTTATCTGAAGAGGGCATCTAGGTCTTCGATATGGGAGAATTTTGGGCAAAGGAAAGTCGTCTTGCGGAAAAACTGTTCGCTTTTcagagaggggggatggggacATTGGACACGGCACCATCTATACCCAAAATCAATCCCTTTTCACTTAGAAAAACGCAAGAATGCCAAAACAATTAGTCTGGAAAGGTGTGTTTTCGTAAGGAACATGCTCGACTACCGGCAAATACCAGGGATTGGTTTCATATTCGAATTCTACAACAACATAGGAACACAGCCTATGCGCGCGACACAACGCCGTTTGGAACGCCCCCCCATGACAAGGAGGTGTCAGCTCCAGGGCGCGAGATTCAAATTTTTTGCATAATGTGGTATATTTTGTATTCTTGAGCTAAACTGCATCCGTGCTCACTTCTCATGTTACATGCAATCTGCCAGCTCTGAATGAGTTTAAATCCTGGAAAATCGAACAATTGCGTTTTCATCCACTTTGCGTTAACATATATAGAGGAGTTGCAAATCAATTGCAACGCTTTATGGAAAATATTTTGTAAAATAGTAATCGGAGCTGCAAAGGATTTATTTTTAACAAGAAAAGGTGGGCAATGTACTAAATGTGTTTcccctctattatattattcatTCATAGTTGTGATGCAGATTGCAGAGCTAATTTATTTTGTATTCGATCATTTGGATAGTCTTTGCGGAACATAAAATGCATGAAATTATCTGCAACAATTTAATGTAGCATTATGAAAAAGCTAATATAACTTCTATAGTTAGTTTGAAAATGTAGGCTATTACTATAATATGGACAGTTTGAGAAAGATTATTATCCAGCATTTGTAAA
>TU1916842
gggagatcgCTTCTTCGCGTCTCTCCCCTGGCAGCCCAGCTGCCGTGCAGTCTGCAAGAACACTTGAACAGAGGTAATGGCGTTGTTTGGATATGGATAGGGCTACACAGCAATGAGAGAGGTAAAGCGCACGACTGGACCAGGACTGGATGGACCAGGGCAACGCGGGAGGATATTTATCTGAAGAGGGCATCTAGGTCTTCGATATGGGAGAATTTTGGGCAAAGGAAAGTCGTCTTGCGGAAAAACTGTTCGCTTTTcagagaggggggatggggacATTGGACACGGCACCATCTATACCCAAAATCAATCCCTTTTCACTTAGAAAAACGCAAGAATGCCAAAACAATTAGTCTGGAAAGGTGTGTTTTCGTAAGGAACATGCTCGACTACCGGCAAATACCAGGGATTGGTTTCATATTCGAATTCTACAACAACATAGGAACACAGCCTATGCGCGCGACACAACGCCGTTTGGAACGCCCCCCCATGACAAGGAGGTGTCAGCTCCAGGGCGCGAGATTCAAATTTTTTGCATAATGTGGTATATTTTGTATTCTTGAGCTAAACTGCATCCGTGCTCACTTCTCATGTTACATGCAATCTGCCAGCTCTGAATGAGTTTAAATCCTGGAAAATCGAACAATTGCGTTTTCATCCACTTTGCGTTAACATATATAGAGGAGTTGCAAATCAATTGCAACGCTTTATGGAAAATATTTTGTAAAATAGTAATCGGAGCTGCAAAGGATTTATTTTTAACAAGAAAAGGTGGGCAATGTACTAAATGTGTTTcccctctattatattattcatTCATAGTTGTGATGCAGATTGCAGAGCTAATTTATTTTGTATTCGATCATTTGGATAGTCTTTGCGGAACATAAAATGCATGAAATTATCTGCAACAATTTAATGTAGCATTATGAAAAAGCTAATATAACTTCTATAGTTAGTTTGAAAATGTAGGCTATTACTATAATATGGACAGTTTGAGAAAGATTATTATCCAGCATTTGTAAATTGTGTGCATGTTAGTAATAAAATGATTTACCATACACATAACAAAGTATGTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1916841 False 1029 lncRNA 0.41 1 23744689 23745717
TU1916842 True 1084 lncRNA 0.40 1 23744689 23745772

Neighbor

gene id symbol gene type direction distance location
faap100 faap100 coding upstream 162133 23576429 ~ 23582556 (+)
LOC110499219 cssa28h16orf52 coding upstream 199966 23534916 ~ 23544723 (+)
LOC110499211 LOC106589600 coding upstream 226066 23509632 ~ 23518623 (+)
rac1 rac1 coding upstream 242034 23493596 ~ 23502655 (+)
LOC110499199 usp42 coding upstream 314506 23396037 ~ 23430183 (+)
LOC110499205 slc38a10 coding downstream 22998 23768770 ~ 23800554 (+)
LOC110499213 LOC106589601 coding downstream 101084 23846856 ~ 23853884 (+)
LOC118942054 NA coding downstream 114210 23859982 ~ 23864171 (+)
LOC110499210 arsg coding downstream 124718 23870490 ~ 23887420 (+)
prkar1ab prkar1a coding downstream 148865 23894637 ~ 23905815 (+)
G1675378 NA non-coding upstream 9602 23734660 ~ 23735087 (+)
G1675377 NA non-coding upstream 10487 23733887 ~ 23734202 (+)
G1675373 NA non-coding upstream 19041 23725350 ~ 23725648 (+)
G1675371 NA non-coding upstream 20674 23723805 ~ 23724015 (+)
G1675370 NA non-coding upstream 20989 23723464 ~ 23723700 (+)
G1675384 NA non-coding downstream 2236 23748008 ~ 23750953 (+)
G1675389 NA non-coding downstream 15968 23761740 ~ 23761943 (+)
G1675420 NA non-coding downstream 91428 23837200 ~ 23837446 (+)
G1675426 NA non-coding downstream 99277 23845049 ~ 23845414 (+)
G1675435 NA non-coding downstream 109554 23855326 ~ 23855754 (+)
LOC110499192 LOC106589579 other upstream 486620 23252800 ~ 23269058 (+)
LOC110513322 rsl1d1 other upstream 1785062 21936590 ~ 21959627 (+)
tnrc6b LOC106589538 other upstream 1898823 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 2294343 21444883 ~ 21450346 (+)
G1677419 LOC100194703 other downstream 1336892 25082664 ~ 25083277 (+)
G1677738 NA other downstream 1890919 25636691 ~ 25641614 (+)
G1678963 NA other downstream 2716422 26462194 ~ 26467953 (+)
LOC110499256 LOC106589642 other downstream 2886363 26632095 ~ 26639269 (+)
LOC110499259 LOC106589644 other downstream 2908855 26654584 ~ 26656111 (+)

Expression


Co-expression Network