G1675442


Basic Information

Item Value
gene id G1675442
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 23964484 ~ 23967320 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1916920
gcaaaagttggtttttaaaaatacaaaactgaaatatcacatttacgtaagtattcagaccttttactccgtactttgttgaagcacctttgtcagcgattacagcctcgagtcttcttgggtatgatgctacacctgtatttggggagtttctcccatttttctctgcagatcctctcaagttctgtcaggttggatggggagcgtcgctgcacagctattttcaggtctctccagtggtgttcaatcgggttcaaaaccaggctctggctgggccactcaaggacattgagagtcttgtcccaaagccactcttggGTGTATGTTTAGGGTTgatgtcctgttgaaaggtgaaccttcgctctaGTCTGAGGTCtcgtactttgctccgttcatcttcccctcgatcctgactagtctcccagtccctgcctctgaaaaacatccccacagcatgatgctgccaccaccatacttcactgtagggatggtggcaggtttcctccagacatgacgattggcattcaggccaaagcgttcaatcttggtttcatcagaccagagaatcttctttctcatggtctgagagtctttaggtgccttttggcaaactccaagtgggctgtcatgtgtctttttactgaggagtggcttccgtctggccactctaccataaaggtctgattggtgaagtgctgcagagatgggagaaccttccagaaggacaaccatctccacagaggaactctagagctctgtcagagtgaccatcgggttcttggtcacctccctgaccaaggccgttcttccccgattgctcagtttggccgggtggccagctctaggaagagtcttggtgcttccaaacttcttccatttaagaatgatggaggccactgtgttcttgggaaccttcagtgctgcagaaatgtgttggtacccttccccggatctgtgcctcgacacaatcctgtcttagagctctacagacaattccttcgtcctcatggcttggtttttgctctgacatgcactgtcaactgtgggaccttatatagacaggtgtttgcctttccaaatcatgttgaatgaatttaatttaccacaggtggactccaattaagttgtagaaacgtctcaaggatgatcaatggaaacaggatgcacctgagctaaattccgagtcacatagcaaagggtctgaatacttatgtaaatatggtacttttgtttttttatttataatacatttgcaaaaaaataaataataattaactgttttttctttgtcgttatggggtgttttgtgtagattgatgcgggggggaaactatttcatccattttagaataaggatgtgacctaacaaaatgttgaacaagtcaaggggtctgaatacattctgcaTGCACTGTAGTTTCTCTCAGACTCAGTCCCAGTCAGGGATAGTAATAAACTGTTGTGTTCACAAGCTACTTACGCCAGGTTTTAAGATGTGCTCATCGATATCAATGACTGACAGTTATTACGTATCACAATCCTTGAAGCTTTTATGGTTGTACAAATCAGCAAATCAAGTGAAATTGAATGGTGTGTGATTAGAGCTGTGACAGTCAAAACATTTTGTCAGATGGTTATTGTAATGCAAAAGACTGCCTGTCCCACtggtaattgaccattaattaacataaacacttttAGCATCTCCAGGCGTGCCTTtggaacattttaaaaagtctaagtCAATACACCATCAGAATaaatccatttatttattttagttaggtcaaaagaaaatgtatttcagaagaacaaaatatgagttggcctactgtaatTTGTTATATTTTTCCCATTACAGAGCGACTGCGCATATGAAGTGACTGTGTTGAGCGAGAACCCGATCTTTTGAAACAACAGGTCTTTACTATGTAAAATTACTTTTGAATTTAGAATGGCCCGTTATCCAATGGACAGAAAGAGGAGCAGGGGAAAAAATACGTCATCTGTATGCACTGGAATAGCGAATGAAGGCCACACGCTTTCTCGCCAGTCCGTTTTGTAATCTACTTGGGTTTTATAGCAGAGAATGTGCTTAATATGAGAAGCTGAGAAATGAATATAACAACACTTATTTCACTCCatgcatcaaccactgtttgagaaGCATGCTCTCACTGCCCTGTTAGGTGATATTCTGCCCAAACACtttatgccatgggctctccaaccttgttcctgcagctacccagtgcttaatttgggaaaccaagtgaaatctgttcgggAACATCGATAATAACATGTTTTCGCAACAAATcgtaattgtattttttttttcggGTTTGGGCTCATAAGCCTATGCAAATGCATAAGCTCTAAAATGTGTATGGGTGTATTAAATGAATCATCACCTTTGAAATCACtgtccattttgttgtgttaggctttgaaacaacatccacaacaaccacttactgtttcaacctgctgttgaacttctttcttcaaattgatcatcacagtgaggtgagttttaaagtgctataggcctactgttttgatgtgtttttttcgattgcatttgcgttgatgtcagagtggttagaggaacagtagagccctgagtaccaggccattagtgacctgatggTAGTGTTATGTCCAGAGTACATAAAAGGAGATTACCATAACTCAACCTTCACATGGAATTTTACTGAGGTCTTGACTCATGACTGCAGGTGTGGCAGTAATATGCTCACCACAACAGCCCTATGTGTGATGTACatttttctgtgtgtttatattgTTTTTGCACTGCAGTTTTGGGATTGgta

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1916920 True 2837 lncRNA 0.42 1 23964484 23967320

Neighbor

gene id symbol gene type direction distance location
lrrc45 lrrc45 coding upstream 26 23946660 ~ 23964458 (+)
prkar1ab prkar1a coding upstream 58669 23894637 ~ 23905815 (+)
LOC110499210 arsg coding upstream 77064 23870490 ~ 23887420 (+)
LOC118942054 NA coding upstream 100313 23859982 ~ 23864171 (+)
LOC110499213 LOC106589601 coding upstream 110600 23846856 ~ 23853884 (+)
LOC110499218 rac3 coding downstream 5172 23972492 ~ 23977455 (+)
LOC110499226 gps1 coding downstream 53367 24020687 ~ 24090566 (+)
slc16a3 LOC106610249 coding downstream 178745 24146065 ~ 24169492 (+)
LOC118942055 NA coding downstream 216239 24183559 ~ 24189459 (+)
LOC110499595 NA coding downstream 662223 24629543 ~ 24632101 (+)
G1675471 NA non-coding upstream 27925 23936345 ~ 23936559 (+)
G1675469 NA non-coding upstream 29648 23934419 ~ 23934836 (+)
G1675465 NA non-coding upstream 35778 23928490 ~ 23928706 (+)
G1675450 NA non-coding upstream 55424 23872866 ~ 23909060 (+)
G1675436 NA non-coding upstream 108315 23855836 ~ 23856169 (+)
G1675487 NA non-coding downstream 2028 23969348 ~ 23969871 (+)
G1675488 NA non-coding downstream 10988 23978308 ~ 23978530 (+)
G1675489 NA non-coding downstream 12091 23979411 ~ 23979626 (+)
G1675490 NA non-coding downstream 12563 23979883 ~ 23980087 (+)
G1675497 NA non-coding downstream 29732 23997052 ~ 23999931 (+)
faap100 faap100 other upstream 383052 23576429 ~ 23582556 (+)
LOC110499192 LOC106589579 other upstream 706415 23252800 ~ 23269058 (+)
LOC110513322 rsl1d1 other upstream 2004857 21936590 ~ 21959627 (+)
tnrc6b LOC106589538 other upstream 2118618 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 2514138 21444883 ~ 21450346 (+)
G1677419 LOC100194703 other downstream 1115344 25082664 ~ 25083277 (+)
G1677738 NA other downstream 1669371 25636691 ~ 25641614 (+)
G1678963 NA other downstream 2494874 26462194 ~ 26467953 (+)
LOC110499256 LOC106589642 other downstream 2664815 26632095 ~ 26639269 (+)
LOC110499259 LOC106589644 other downstream 2687307 26654584 ~ 26656111 (+)

Expression


Co-expression Network