G1675490


Basic Information

Item Value
gene id G1675490
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 23979883 ~ 23980087 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1916968
TGATATTTACTGCCGCAACGATCAGCATTTTATCTGTTATCTGTGTACAATGGATGAACACAAAGGCCATGATACAGTCCCAGCTGAATCAGAAAGGACTGAGAGACAGGTCAGGACAAAACTCATTACTGTTGCTGCTTATTCACATTATTACTGTGAACATTTTGAAACTAGTAGTCACTTTCTGTATGACAATAAAAAGAAC

Function

NR:

description
E3 ubiquitin/ISG15 ligase TRIM25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1916968 True 205 lncRNA 0.38 1 23979883 23980087

Neighbor

gene id symbol gene type direction distance location
LOC110499218 rac3 coding upstream 2428 23972492 ~ 23977455 (+)
lrrc45 lrrc45 coding upstream 15425 23946660 ~ 23964458 (+)
prkar1ab prkar1a coding upstream 74068 23894637 ~ 23905815 (+)
LOC110499210 arsg coding upstream 92463 23870490 ~ 23887420 (+)
LOC118942054 NA coding upstream 115712 23859982 ~ 23864171 (+)
LOC110499226 gps1 coding downstream 40600 24020687 ~ 24090566 (+)
slc16a3 LOC106610249 coding downstream 165978 24146065 ~ 24169492 (+)
LOC118942055 NA coding downstream 203472 24183559 ~ 24189459 (+)
LOC110499595 NA coding downstream 649456 24629543 ~ 24632101 (+)
sdk2b sdk2 coding downstream 912843 24892930 ~ 25354425 (+)
G1675489 NA non-coding upstream 257 23979411 ~ 23979626 (+)
G1675488 NA non-coding upstream 1353 23978308 ~ 23978530 (+)
G1675487 NA non-coding upstream 10012 23969348 ~ 23969871 (+)
G1675442 NA non-coding upstream 12563 23964484 ~ 23967320 (+)
G1675471 NA non-coding upstream 43324 23936345 ~ 23936559 (+)
G1675497 NA non-coding downstream 16965 23997052 ~ 23999931 (+)
G1675556 NA non-coding downstream 102263 24082350 ~ 24083181 (+)
G1675586 csnk1d non-coding downstream 198862 24178949 ~ 24179418 (+)
G1675585 csnk1d non-coding downstream 200272 24180359 ~ 24186488 (+)
faap100 faap100 other upstream 398451 23576429 ~ 23582556 (+)
LOC110499192 LOC106589579 other upstream 721814 23252800 ~ 23269058 (+)
LOC110513322 rsl1d1 other upstream 2020256 21936590 ~ 21959627 (+)
tnrc6b LOC106589538 other upstream 2134017 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 2529537 21444883 ~ 21450346 (+)
G1677419 LOC100194703 other downstream 1102577 25082664 ~ 25083277 (+)
G1677738 NA other downstream 1656604 25636691 ~ 25641614 (+)
G1678963 NA other downstream 2482107 26462194 ~ 26467953 (+)
LOC110499256 LOC106589642 other downstream 2652048 26632095 ~ 26639269 (+)
LOC110499259 LOC106589644 other downstream 2674540 26654584 ~ 26656111 (+)

Expression


Co-expression Network