G1675586 (csnk1d)


Basic Information

Item Value
gene id G1675586
gene name csnk1d
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 24178949 ~ 24179418 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1917083
ctgtgtgtgaggtgggtgtgaggggtGTAGGCGGCGCCGGATCCTGTGTTCCTCGGGGTCGTCCTGAGGCGGCCGGGAGTCCCCTGGCCCCAGGGTTTCTGCCGTGTCTCAGcctatcctctctgtccctccgctCCCGCTCCGCCTCCTCCGCTGCACGGTTGGCCCCCTTGGAATTAGGGGCAGTAAACTTGAGCATGTTCCAGTCAAAGACGTAGTCGTAGGAGAAGCCCTGTCTGTGGAACAGGTTTCTGAACAGCTGTCTCAGGTAAGAGTAGTCCGGCTTGTCATCGAACCGCAGAGAGCGACAGAAGTTCAGGTAGGTG

Function

symbol description
csnk1d Enables protein serine/threonine kinase activity. Involved in several processes, including microtubule cytoskeleton organization; non-motile cilium assembly; and protein localization to organelle. Located in several cellular components, including Golgi apparatus; microtubule cytoskeleton; and perinuclear region of cytoplasm. Implicated in advanced sleep phase syndrome 2. Biomarker of Alzheimer's disease.

NR:

description
PREDICTED: casein kinase I isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1917083 True 326 lncRNA 0.60 2 24178949 24179418

Neighbor

gene id symbol gene type direction distance location
slc16a3 LOC106610249 coding upstream 9457 24146065 ~ 24169492 (+)
LOC110499226 gps1 coding upstream 150068 24020687 ~ 24090566 (+)
LOC110499218 rac3 coding upstream 201494 23972492 ~ 23977455 (+)
lrrc45 lrrc45 coding upstream 214491 23946660 ~ 23964458 (+)
prkar1ab prkar1a coding upstream 273134 23894637 ~ 23905815 (+)
LOC118942055 NA coding downstream 4141 24183559 ~ 24189459 (+)
LOC110499595 NA coding downstream 450125 24629543 ~ 24632101 (+)
sdk2b sdk2 coding downstream 713512 24892930 ~ 25354425 (+)
cdc42ep4b cdc42ep4 coding downstream 1185397 25364815 ~ 25392592 (+)
si:ch211-216b21.2 LOC106589629 coding downstream 1823854 26003272 ~ 26050911 (+)
G1675556 NA non-coding upstream 95768 24082350 ~ 24083181 (+)
G1675497 NA non-coding upstream 179018 23997052 ~ 23999931 (+)
G1675490 NA non-coding upstream 198862 23979883 ~ 23980087 (+)
G1675489 NA non-coding upstream 199323 23979411 ~ 23979626 (+)
G1675585 csnk1d non-coding downstream 941 24180359 ~ 24186488 (+)
G1675662 NA non-coding downstream 61949 24241367 ~ 24241730 (+)
G1676609 NA non-coding downstream 225034 24404452 ~ 24404811 (+)
G1676610 NA non-coding downstream 225526 24404944 ~ 24405223 (+)
G1676611 Rpl38 non-coding downstream 228072 24407490 ~ 24409559 (+)
faap100 faap100 other upstream 597517 23576429 ~ 23582556 (+)
LOC110499192 LOC106589579 other upstream 920880 23252800 ~ 23269058 (+)
LOC110513322 rsl1d1 other upstream 2219322 21936590 ~ 21959627 (+)
tnrc6b LOC106589538 other upstream 2333083 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 2728603 21444883 ~ 21450346 (+)
G1677419 LOC100194703 other downstream 903246 25082664 ~ 25083277 (+)
G1677738 NA other downstream 1457273 25636691 ~ 25641614 (+)
G1678963 NA other downstream 2282776 26462194 ~ 26467953 (+)
LOC110499256 LOC106589642 other downstream 2452717 26632095 ~ 26639269 (+)
LOC110499259 LOC106589644 other downstream 2475209 26654584 ~ 26656111 (+)

Expression


Co-expression Network