G1675585 (csnk1d)


Basic Information

Item Value
gene id G1675585
gene name csnk1d
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 24180359 ~ 24186488 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1917082
GTTGGTGAACACCCGCTCTGTCAGTTGTCTCACCATCTGGTCAGCCAGCAGCAGGACAGTCTTGAGGCTGAACTTGCGGGAGCAGAAGTTGAACAGGTCCTCCAGACTGGGGCCTAGCAGCTCCATCACCATCACGTTGTAGTCTCCCTCTGCTCCACACCACTTTATTGTAGGGATGCCCActcctccctgcatCATCTTGTAGATCTTGCTCTCGATGTGGAGCTGTGGGTGCTTGGTCTTCACACATTCCAGCTTGATGGCCACCTCCTCTCCCACTGAGATGTCTGTGCCTAAATAGATGTCTCCAAAGGATCCACTTCCAATTTTCCTTCCCAGCCTGTATCGGTTTCCCACTCTTAACTCCATGGTTCAATGTTATTCTTACGAAGCAATCTTCAGAATGTGTTGTTTTGAAAAATCCACCCGGGTGTTTTTGCTCTCTTTGGTTACCTAACCACCCCAAATATCACCTTACTTTGCTGGTATACAAACTCCTTTATTCAGACGCCCCCCTCCCCTAAATAATAGAAGATTATTAAATTCCTTCTGTAACAATCCAACTTTCACCATCCCTTTTATACCTATGTCTTTTTCAGAACACAACGATATTGCTATTGCCAAAAGCTCAGAACGTGTAGACTATGTTCTTGCTTTTTAAAATGTACTCTTTCCCGAAATGAAGCAGGATGCAGACGGATTTTGATGGAAGCTTCTTCCCCACTGTAGGATTGTCCTCCGTTGTGGACAGCCTG

Function

symbol description
csnk1d Enables protein serine/threonine kinase activity. Involved in several processes, including microtubule cytoskeleton organization; non-motile cilium assembly; and protein localization to organelle. Located in several cellular components, including Golgi apparatus; microtubule cytoskeleton; and perinuclear region of cytoplasm. Implicated in advanced sleep phase syndrome 2. Biomarker of Alzheimer's disease.

NR:

description
PREDICTED: casein kinase I-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1917082 True 755 lncRNA 0.46 3 24180359 24186488

Neighbor

gene id symbol gene type direction distance location
slc16a3 LOC106610249 coding upstream 10867 24146065 ~ 24169492 (+)
LOC110499226 gps1 coding upstream 151478 24020687 ~ 24090566 (+)
LOC110499218 rac3 coding upstream 202904 23972492 ~ 23977455 (+)
lrrc45 lrrc45 coding upstream 215901 23946660 ~ 23964458 (+)
prkar1ab prkar1a coding upstream 274544 23894637 ~ 23905815 (+)
LOC110499595 NA coding downstream 443055 24629543 ~ 24632101 (+)
sdk2b sdk2 coding downstream 706442 24892930 ~ 25354425 (+)
cdc42ep4b cdc42ep4 coding downstream 1178327 25364815 ~ 25392592 (+)
si:ch211-216b21.2 LOC106589629 coding downstream 1816784 26003272 ~ 26050911 (+)
LOC110499247 LOC106589631 coding downstream 2043657 26230145 ~ 26235558 (+)
G1675586 csnk1d non-coding upstream 941 24178949 ~ 24179418 (+)
G1675556 NA non-coding upstream 97178 24082350 ~ 24083181 (+)
G1675497 NA non-coding upstream 180428 23997052 ~ 23999931 (+)
G1675490 NA non-coding upstream 200272 23979883 ~ 23980087 (+)
G1675662 NA non-coding downstream 54879 24241367 ~ 24241730 (+)
G1676609 NA non-coding downstream 217964 24404452 ~ 24404811 (+)
G1676610 NA non-coding downstream 218456 24404944 ~ 24405223 (+)
G1676611 Rpl38 non-coding downstream 221002 24407490 ~ 24409559 (+)
G1676642 NA non-coding downstream 242251 24428739 ~ 24429172 (+)
faap100 faap100 other upstream 598927 23576429 ~ 23582556 (+)
LOC110499192 LOC106589579 other upstream 922290 23252800 ~ 23269058 (+)
LOC110513322 rsl1d1 other upstream 2220732 21936590 ~ 21959627 (+)
tnrc6b LOC106589538 other upstream 2334493 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 2730013 21444883 ~ 21450346 (+)
G1677419 LOC100194703 other downstream 896176 25082664 ~ 25083277 (+)
G1677738 NA other downstream 1450203 25636691 ~ 25641614 (+)
G1678963 NA other downstream 2275706 26462194 ~ 26467953 (+)
LOC110499256 LOC106589642 other downstream 2445647 26632095 ~ 26639269 (+)
LOC110499259 LOC106589644 other downstream 2468139 26654584 ~ 26656111 (+)

Expression


Co-expression Network