G1676611 (Rpl38)


Basic Information

Item Value
gene id G1676611
gene name Rpl38
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 24407490 ~ 24409559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1918194
TTCCTCTTTTTATTACAATTCACTGTACACAAAGATGGTCCTCTACTTGAGCTCCTTCACAGCCAGACCTGGGGGCAGGGACTGCTTCAGCTTCTCGGCCTTCTCCTTGTCCGTGATGACGAGGGTGTACAGGTACCTGCTGCAACGCACCTTGAACTTGACATTTTCCTTGTTCTTCTTGATCTTTACGGCTGTGGGACAACAGATGAATCTgaacattcaacaccatggttTGCAGTTGGAATTTCAATGCAAAATACTAAGTGGGTGTAGAAATCAAAttagtcacatgcttcgtaaacagtgaaatgcttacttaaattactataaataccGTCAGAAAAGTCAGAAGAGCAGAGTAGTGGGCAACAACGCAATACTTACACTTGGCATCCTTCCTTCTTGCTGTAAGCAGGAAATCTTTTATTTCTTCAATTTTGCGTGGCTAAAATAAAACAGGGAAGAATAAGTACACAGCAGCTATACCATTTTCTGCAACAACTAATCACCCAACCAGAGGTAACCTCAAGGTAAGGACCTTAACACGGCATGATAACTAGCTATGTTAGCAATGTGGTTAACTAGCCATGGGGAGAATACCTAAGTAAAAGTAATATGAAGATTGTCAGTGGACCGGTGGAACTAAAGATTCTGGTTAAATCGAAAATTAGCACTAGGTCCATCCTTATTCTGGCAAGCGTGTAAATGCATCACATGCACGAGACAGCCTGTGATGTTTGGACAACTTGCGAAGACATGCTCTACTAACTAGAACATGGCTGACAGATATGCCTTTCAATGCAAATTATTACCGCTGGATTTGTTGACATTTCAGTTCGCGTTAACGAAAGACACATTACACCACCTCAGTTTGTTAGTTAACAATGTACTAACGTTGGCTACCGTTAAGGCCGCACCGGCTGTGGCCCGTACAAGCGATTAGCCTACTCGGCTAGCTACCATAACTAGCTGTGCCAACACGGCAAAGATATATTAGCGGTAACGTTATGCCCATTTTCGTTAATCCACACTAGGTTAACGAAATGCTGTTCATCGTGCAATTATAGATATATAAATGTAGCGAAAACGGTCCTCACCATCTTGCCGTGTTTGCGGACTGAAGCCTGGAACACGGAAGAAATACAAGGGTTAGTATACATATATTTAAAGTCAAATAACAATCAATGGAAACCAAATAACTGCGGAATTATGTGGACTAATGTTTCTAAGATCATTGTTGAATTATTTCGTGGACGTATTTGTCAGTTATAAGAAGGATGAATAATGATTCTACTTTCCATTCTGTATGTATGGAAAACATGCAACTTACACAGCCTACAAGAGAGGGGATGAAGAGGGTGGAACTTCCGCTGACGCAATCTTTATAGTCAAGTTACGGCGACTCATGGAGGACAAATGTAACACGGACTACTTTCTCCAAAGAGTATGGATATACTGATATGTCTTT
>TU1918197
TTCCTCTTTTTATTACAATTCACTGTACACAAAGATGGTCCTCTACTTGAGCTCCTTCACAGCCAGACCtgGGGGGCAGGGACTGCTTCAGCTTCTCGGCCTTCTCCTTGTCCGTGATGACGAGGGTGTACAGGTACCTGCTGCAACGCACCTTGAACTTGACATTTTCCTTGTTCTTCTTGATCTTTACGGACTTGGCATCCTTCCTTCTTGCTGTAAGCAGGAAATCTTTTATTTCTTCAATTTTGCGTGGCATCTTGCCGTGTTTGCGGACTGAAGCACAGCCTACAAGAGAGGGGATGAAGAGGGTGGAACTTCCGCTGACGCAATCTTTATAGTCAAGTTACGGCGACTCATGGAGGACAAATGTAACACGGACTACTTTCTCCAAAGAGTATGGATATACTGATATGTCTTT

Function

symbol description
rpl38 Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL38 (ribosomal protein L38).

NR:

description
60S ribosomal protein L38

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1918194 False 1468 lncRNA 0.41 2 24407490 24409559
TU1918197 True 418 lncRNA 0.46 5 24407490 24409559

Neighbor

gene id symbol gene type direction distance location
LOC118942055 NA coding upstream 218031 24183559 ~ 24189459 (+)
slc16a3 LOC106610249 coding upstream 237998 24146065 ~ 24169492 (+)
LOC110499226 gps1 coding upstream 378609 24020687 ~ 24090566 (+)
LOC110499218 rac3 coding upstream 430035 23972492 ~ 23977455 (+)
lrrc45 lrrc45 coding upstream 443032 23946660 ~ 23964458 (+)
LOC110499595 NA coding downstream 219984 24629543 ~ 24632101 (+)
sdk2b sdk2 coding downstream 483371 24892930 ~ 25354425 (+)
cdc42ep4b cdc42ep4 coding downstream 955256 25364815 ~ 25392592 (+)
si:ch211-216b21.2 LOC106589629 coding downstream 1593713 26003272 ~ 26050911 (+)
LOC110499247 LOC106589631 coding downstream 1820586 26230145 ~ 26235558 (+)
G1676610 NA non-coding upstream 2267 24404944 ~ 24405223 (+)
G1676609 NA non-coding upstream 2679 24404452 ~ 24404811 (+)
G1675662 NA non-coding upstream 165760 24241367 ~ 24241730 (+)
G1675585 csnk1d non-coding upstream 221002 24180359 ~ 24186488 (+)
G1675586 csnk1d non-coding upstream 228072 24178949 ~ 24179418 (+)
G1676642 NA non-coding downstream 19180 24428739 ~ 24429172 (+)
G1676736 NA non-coding downstream 102474 24512033 ~ 24512237 (+)
G1676738 NA non-coding downstream 103472 24513031 ~ 24513335 (+)
G1676754 NA non-coding downstream 114190 24523749 ~ 24524213 (+)
G1676759 NA non-coding downstream 117507 24527066 ~ 24527287 (+)
faap100 faap100 other upstream 826058 23576429 ~ 23582556 (+)
LOC110499192 LOC106589579 other upstream 1149421 23252800 ~ 23269058 (+)
LOC110513322 rsl1d1 other upstream 2447863 21936590 ~ 21959627 (+)
tnrc6b LOC106589538 other upstream 2561624 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 2957144 21444883 ~ 21450346 (+)
G1677419 LOC100194703 other downstream 673105 25082664 ~ 25083277 (+)
G1677738 NA other downstream 1227132 25636691 ~ 25641614 (+)
G1678963 NA other downstream 2052635 26462194 ~ 26467953 (+)
LOC110499256 LOC106589642 other downstream 2222576 26632095 ~ 26639269 (+)
LOC110499259 LOC106589644 other downstream 2245068 26654584 ~ 26656111 (+)

Expression


Co-expression Network