G1677403


Basic Information

Item Value
gene id G1677403
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 25060540 ~ 25063363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1919041
TGAGAggtcatctcctcttctctccactcctcttctctcttacctctccactctactcctcttctctctactcctcttctctcctacctctcccctccactcctcttctctatACTCCTCTTCTTTCTTACCTCTCCACAccactccttttctctccactactcttctttcctacctctcccctccacccctcttctctccactcttcttctctcctacctttccactccactcctcttctctctactcctcttctctcttacctctccactcctcttctctcctacctctcccctccactcctgttctctctactcctcttctctcttaccTCTCCACACCACTCCTTTTCTCTatactcctcttct
>TU1919039
ctctactcctctccactcctctctactccactcctcttttctcctacctctcccctccactcccttctctctactcctcttctctcttacctctccaatccaacctctcccctccactcctcttctctactcctcttctctcctacctttccactccactcctcttctctctactcctcttctctctactcctcttctctcttaccctacctctctactccactcctcttctctcctacctctccactcctcttctctactcctcttctctcctacttctcctattctctcctacttctcctcttctctcctacctctctactccactcctcttctctccactcttcttctcccctacctctctactccactcctcttctctctactcctcttctctcctaccTCTCCACTCCTattctctctactcctcttctctcctacctctctactcctctccactcctcttttctcctacctctcccctccactcccttctctctactcctcttctctcttacctctcccctacaacctctcccctccactcctcttctctactGCTCTTCTCTCCTACCTTTCCAC
>TU1919038
CACTACTCTTCTTTCctacctctcccctccactcctcttctctcctacctctccactcctcttctctactcctcttctctcctacttctcctattctctcctacttctcctcttctctcctacctctctactccactcctcttctctccactcttcttctcccctacctctctactccactcctcttctctctactcctcttctctcctaccTCTCCACTCCTattctctctactcctcttctctcctacctctctactcctctccactcctcttttctcctacctctcccctccactcccttctctctactcctcttctctcttacctctcccctacaacctctcccctccactcctcttctctactGCTCTTCTCTCCTACCTTTCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1919041 False 368 lncRNA 0.50 2 25060540 25061691
TU1919039 False 582 lncRNA 0.51 3 25061182 25063363
TU1919038 True 391 lncRNA 0.51 2 25062763 25063363

Neighbor

gene id symbol gene type direction distance location
LOC110499595 NA coding upstream 428439 24629543 ~ 24632101 (+)
LOC118942055 NA coding upstream 871081 24183559 ~ 24189459 (+)
slc16a3 LOC106610249 coding upstream 891048 24146065 ~ 24169492 (+)
LOC110499226 gps1 coding upstream 1031659 24020687 ~ 24090566 (+)
LOC110499218 rac3 coding upstream 1083085 23972492 ~ 23977455 (+)
cdc42ep4b cdc42ep4 coding downstream 301452 25364815 ~ 25392592 (+)
si:ch211-216b21.2 LOC106589629 coding downstream 939909 26003272 ~ 26050911 (+)
LOC110499247 LOC106589631 coding downstream 1166782 26230145 ~ 26235558 (+)
sgca LOC106589632 coding downstream 1199696 26263059 ~ 26284385 (+)
tmem101 tmem101 coding downstream 1320142 26383505 ~ 26388284 (+)
G1677396 NA non-coding upstream 2447 25054191 ~ 25058093 (+)
G1677389 NA non-coding upstream 17550 25042239 ~ 25042990 (+)
G1677367 NA non-coding upstream 53296 25006888 ~ 25007244 (+)
G1677303 NA non-coding upstream 130159 24929918 ~ 24930381 (+)
G1677233 NA non-coding upstream 189343 24870971 ~ 24871197 (+)
G1677422 NA non-coding downstream 28260 25091623 ~ 25091979 (+)
G1677487 NA non-coding downstream 137857 25201220 ~ 25201567 (+)
G1677531 NA non-coding downstream 202986 25266349 ~ 25275068 (+)
G1677614 NA non-coding downstream 381415 25444778 ~ 25445135 (+)
G1677616 NA non-coding downstream 384392 25447755 ~ 25448030 (+)
faap100 faap100 other upstream 1479108 23576429 ~ 23582556 (+)
LOC110499192 LOC106589579 other upstream 1802471 23252800 ~ 23269058 (+)
LOC110513322 rsl1d1 other upstream 3100913 21936590 ~ 21959627 (+)
tnrc6b LOC106589538 other upstream 3214674 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 3610194 21444883 ~ 21450346 (+)
G1677419 LOC100194703 other downstream 19301 25082664 ~ 25083277 (+)
G1677738 NA other downstream 573328 25636691 ~ 25641614 (+)
G1678963 NA other downstream 1398831 26462194 ~ 26467953 (+)
LOC110499256 LOC106589642 other downstream 1568772 26632095 ~ 26639269 (+)
LOC110499259 LOC106589644 other downstream 1591264 26654584 ~ 26656111 (+)

Expression


Co-expression Network