G1678889


Basic Information

Item Value
gene id G1678889
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 26333738 ~ 26333953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1920616
gatgtcaggagaacgctatctgccccaatgcatagtgccaactgtaatgtttggtggaggaggaataatggtctggggctgtttttcatgtttcgggctaggccccttagttccagtgaagggaaatcttaatgctacagcgtaCATaccaatgacattctagacgattcagtgcccccgtgcacaaatcaaggtccatacagaaatggtttgtta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1920616 True 216 lncRNA 0.46 1 26333738 26333953

Neighbor

gene id symbol gene type direction distance location
sgca LOC106589632 coding upstream 58757 26263059 ~ 26284385 (+)
LOC110499247 LOC106589631 coding upstream 98180 26230145 ~ 26235558 (+)
si:ch211-216b21.2 LOC106589629 coding upstream 282827 26003272 ~ 26050911 (+)
cdc42ep4b cdc42ep4 coding upstream 941146 25364815 ~ 25392592 (+)
sdk2b sdk2 coding upstream 979313 24892930 ~ 25354425 (+)
tmem101 tmem101 coding downstream 49552 26383505 ~ 26388284 (+)
g6pc3 g6pc3 coding downstream 71159 26405112 ~ 26407414 (+)
LOC110499256 LOC106589642 coding downstream 298142 26632095 ~ 26639269 (+)
LOC110499259 LOC106589644 coding downstream 320631 26654584 ~ 26656111 (+)
LOC110498782 LOC105021192 coding downstream 449157 26783110 ~ 26785166 (+)
G1678881 NA non-coding upstream 11628 26321696 ~ 26322110 (+)
G1678867 NA non-coding upstream 32366 26301112 ~ 26301372 (+)
G1678820 NA non-coding upstream 35272 26295772 ~ 26298466 (+)
G1678847 cdrt1 non-coding upstream 104996 26228495 ~ 26228742 (+)
G1678907 NA non-coding downstream 36734 26370687 ~ 26409656 (+)
G1678925 NA non-coding downstream 39813 26373766 ~ 26375139 (+)
G1678910 NA non-coding downstream 55010 26388963 ~ 26393373 (+)
G1679041 NA non-coding downstream 235480 26569433 ~ 26569746 (+)
G1679042 NA non-coding downstream 235866 26569819 ~ 26570088 (+)
G1677738 NA other upstream 692124 25636691 ~ 25641614 (+)
G1677419 LOC100194703 other upstream 1250461 25082664 ~ 25083277 (+)
faap100 faap100 other upstream 2752306 23576429 ~ 23582556 (+)
LOC110499192 LOC106589579 other upstream 3075669 23252800 ~ 23269058 (+)
LOC110513322 rsl1d1 other upstream 4374111 21936590 ~ 21959627 (+)
G1678963 NA other downstream 128241 26462194 ~ 26467953 (+)
G1679135 NA other downstream 366439 26700392 ~ 26775680 (+)
G1679823 NA other downstream 750473 27084426 ~ 27087463 (+)

Expression


Co-expression Network