G1678910


Basic Information

Item Value
gene id G1678910
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 26388963 ~ 26393373 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1920639
ACACAATCCTTTGGGCAAAGCTGAAGGACCTGACCAGACGGCAATGACTTCAAGTAATTCCTTTCATCAACATGAATTTGACAAGGGAGCATTTTTTTGATGTTCTATTAGCTACATGGTGACATTTAACCATGTTTTAGCTAGAAGCTCATTTACAGCTAATGCCAGCACCAAGAGGGCAGATGACAAATACAGTCACTAAtcctagatatggctactaatggggctaaactgcctgccatccaggacctctacaccaggcggtgtcagaggaaggccctaaaaatggtcaaagaccccagccaccccagtcatatactgttctctctactatcacatggcaagcggtaccggagtgccaagcctaggacaaaaaggcttctcaaggcttcttttacccccaagccataatactcctGAAAAGaggacctgagccctaggaccatgcctcaggacaccctggcatgatgactccttgctgcccccagtccacctggccgtgctgctgctccagtttcaactgttctgcctgcggctatggaaccctggcctgatcaccggatgtgctacctgtcccagacctgctgttttcaactctctagataCAGCAGGAGCTGTAGCGATACTCTTAAACATTGGCTATGAaatgccaactgacatttactcctgaggtgctgacttgttgcaccctcaacaactactgtgattattattatttgaccatgctggtcatttatgaacatttgaacatctaggccatgttctgttataatctctacccagcacagccagaagaggactggccacccctcagccttgttcctctctaggtttattcctaggttttggcctttctagggagtttttcctagccactgtgcttctacagctgcattgcttgctgtttggggttttaggctgagtttctgtacagcactttgagatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcag

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1920639 True 1007 lncRNA 0.48 3 26388963 26393373

Neighbor

gene id symbol gene type direction distance location
tmem101 tmem101 coding upstream 679 26383505 ~ 26388284 (+)
sgca LOC106589632 coding upstream 113982 26263059 ~ 26284385 (+)
LOC110499247 LOC106589631 coding upstream 153405 26230145 ~ 26235558 (+)
si:ch211-216b21.2 LOC106589629 coding upstream 338052 26003272 ~ 26050911 (+)
cdc42ep4b cdc42ep4 coding upstream 996371 25364815 ~ 25392592 (+)
g6pc3 g6pc3 coding downstream 11739 26405112 ~ 26407414 (+)
LOC110499256 LOC106589642 coding downstream 238722 26632095 ~ 26639269 (+)
LOC110499259 LOC106589644 coding downstream 261211 26654584 ~ 26656111 (+)
LOC110498782 LOC105021192 coding downstream 389737 26783110 ~ 26785166 (+)
si:zfos-1056e6.1 LOC105021192 coding downstream 401801 26795174 ~ 26802125 (+)
G1678925 NA non-coding upstream 13824 26373766 ~ 26375139 (+)
G1678889 NA non-coding upstream 55010 26333738 ~ 26333953 (+)
G1678881 NA non-coding upstream 66853 26321696 ~ 26322110 (+)
G1678867 NA non-coding upstream 87591 26301112 ~ 26301372 (+)
G1678820 NA non-coding upstream 90497 26295772 ~ 26298466 (+)
G1679041 NA non-coding downstream 176060 26569433 ~ 26569746 (+)
G1679042 NA non-coding downstream 176446 26569819 ~ 26570088 (+)
G1679044 NA non-coding downstream 180975 26574348 ~ 26574588 (+)
G1679046 NA non-coding downstream 186060 26579433 ~ 26579713 (+)
G1679056 NA non-coding downstream 201029 26594402 ~ 26595350 (+)
G1677738 NA other upstream 747349 25636691 ~ 25641614 (+)
G1677419 LOC100194703 other upstream 1305686 25082664 ~ 25083277 (+)
faap100 faap100 other upstream 2807531 23576429 ~ 23582556 (+)
LOC110499192 LOC106589579 other upstream 3130894 23252800 ~ 23269058 (+)
LOC110513322 rsl1d1 other upstream 4429336 21936590 ~ 21959627 (+)
G1678963 NA other downstream 68821 26462194 ~ 26467953 (+)
G1679135 NA other downstream 307019 26700392 ~ 26775680 (+)
G1679823 NA other downstream 691053 27084426 ~ 27087463 (+)

Expression


Co-expression Network