G1678963


Basic Information

Item Value
gene id G1678963
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 26462194 ~ 26467953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1920693
tttgattttatttgacaaGGAGCTCATCAAACTGTCAGATAGAAGGGAAGTTATCACATCCCAGGTATGTGTGTTTCTCAAATTGAATCAGAAATACAGAAACACCAAATGGAATCTCAAGATATCACAAATAGGGAGAGAGGTTTTCCTCTCAGAGCAGAagcagtagagagaggaggggttagcaTTGTGGGATTGccaaacacacacctgtctgtcgtCTGGTTCGTCCATGCTGTAATGTTCTCCGTCTGGCCCCTCACTAGTTTCGTCTCCCAACAGGAAGCCCAGTCGCGTCATCAATGTGTTGGCTGCCTCATCCACCGACGGAGGGGGCCCCAGCTCCCCGCTTGACTCCccttcagagagaaagaggagagtcgggggaaagagagatagagtaTGGGGGAaagtgacaaagagagagagagggggcgggcgaagaggaagagagagaaagagagagggagtggagaaaaaaaggagtgtgtttgtgagtgagtgtAAAACAAGTAAAACAGAGTCAACCAACTCTCTTGACCTGGAAGGCAACCACACCTTGGATAGACTATAGAAGGAGCAGTCTAGCACATGAAAATTAAAAGATTCACATCGAAGCGGAGGAACAAACTGCTGGATAAATTTTCCTAACCTGTTCAAGCCCCAACTCAGAAAAATGTGCAACACCTGAGCATGTTAGCTACATATTCTCCTGCTGAAAAATGTTCAGTACAAATCACAAAATCACAAAGAGAATACAAATGCGAGAAGgcatatagtagagtagagtagaaaccTAGCAGAGTAGAAAAAAGAAACAGTCTCTACCTGAACCACCCCTGAGAGCAGAGCTGTGCATCAGAGGTAAATTCTCCTGAGATTGAGACTGAACTGGACACACTGGCGTTGAGACAGCCAACTCCTTCTAGCCATGACATGACATGCCTGTAAAGATTCCTCCACACACAATTGTTCCCATCCCACACAGTCAGCGTTGTGTTTGGATGAGGTAAGTGAATACGCCCCTCACCTGTGTGAGggcagggtgtgtgtatgtgtacgtgtctgtgtgtgtgtgtgtgtttctaagagagagagtaatagagggagagagagagagagatggagagatagatcgagggagagagagagcgatagagggagagaaagagagaaatagtagATGTGAATCACTCTACTCACACCGTCTACTGGCATGTACACAGCTACATTGGAGAGGGACTGAATATCCTCTGAAAATACAGTATTATCATATGATGATAATATAGAAGACACTTCTAGCATTGCTGGAGGTTTCACTGTCCTCATTACTGTTTATATTTCTTTAGatcctgctctggtctggtcaTGAGGGCACAATACCAGGATGTTGTTATTAAACTAATACCTGATACTGCAGCTGGTGGACTACTTTGTTATGGGCGGGGTGTTGCTGGGTAACGTGTTGATCTCAGCTGAAGAGCTGgtttctctctgctgtgtgtggtGTATGGGTGTTTGATGTGGTCGTGGGAATGTCAAAGAAAGACAGGTGACAGAAGGTGATGGTGTTCAACTAAACAGTGGTGAGACACTGTAGATTTGAACAGCTGCTTTCTTTGGGTGTATTTAAAAggaaccaaacggaagcaaacgggctgaaacagggagggacctacctcaacttgtccaataagaaaaacTTGTGTTAATTACTAAATAattgcactaatgaatacaacccaggtctcccaccctctctccctaccatccctcccctctctctgactgactggtCAGACCAGTCCGACAGGTAAACAGACCTGAGAGGTTTAGACCATTAGAGACCAAGGTGAAAGGGTGCCATTGGGATGGTGTTTACTAAGTAATTCATGCATTCTACATAAACAATAATGCACTCACAGGAGACTGCAGTAATCACACTACACATTATATGACCCCCAGAACTCAGACACAGTAAAGTGGTCCTTACAAACATGCCCTTAGCCCTCAATGGAACTCCAAGCATTCCTCCTTGTCTGTAAGACATCAATCAGTCTACACTCCTCCTACAGAATTTGAATATATAGCGAGCGCTTGTGTGTTTGAGGGTCTCCCCCTCTTAGTCCCCTTCGCTCAGattcctggagagagacagatggttgCCATGGGAACTATCTGGCGGCGTGGCGGGCAGCGAGGAGGAATGTGTTCCTGTGCAGACGGCCAGACGCATCGGTTTCTACCCCGGCCGTCCACGGAATTAacgtggtccacacacaccaacacagtcgtgaagagaggacgacaatgcctcttcccccctAGGAGGCttaaaaggtttggcatgggccatcagatcctcaaaaagttatacagctgcaccattgagagcatcttgactggctgcatcaccgcttggtatggcaactgcttggcatctgactgaacggcgctacagagggtagtccgtatggcccagtgcatcactggggccgagctccctgccatccaggacctctataccaggcagtgtcagaggaaggccctaaaatacGTCAAAAGACTCCATCCACCCAAGATATATACTGTTCTCTCCGCTACGGTACCAGTGCAACTAGCCTGGAACCatcaggaccctgaacagcttctacccccaagccataagactgctataTAGTTAACCAAATAACTACTCAGACTATCTGCATATACCcccttttgcactaactcttttgactcatcacataagctgctactgtttattatatatcctgttgtccagtcacttcacccctactacctacagtgcattcggaaagtattcagacccctttactttttccacattttgtttctttacagccttattctaaaaatgattaaattgAAACTGTTCCTCATTAACCTTCACACAAtaacccattatgacaaagcgaaaacaggtttttagaaatgttcgcaaatttatataaaaaaaaacggaaataccttatttacataagtattcagaccctttgccatgagactcaaaattgagctcaggtgcatcctgtttccattgatcatccttgagatggtaCTGAAAAATGACCTccctcattcttaaattgaaggaGTTCggaaccgccaagactcttcctagagctggactcctggccaaactgaacaatcaggggagaatggccttggtcagcgaggtgaccaagaactcaatggtcTCCAGAGTttctttgtggagatgggagaaccttccagaaggacaaccatctctgcagcactccaccaatcaggccgttatggtagagtggccagacggaagcaactcctcagtaaaaggcacatgatagcccgcttggagtttgtcaaaaggcacctaaaggaatctcagaccatgagaaacaacaacAATTCTTTGTccagaatgccaagcatcacgtctggaggggAACCTGgaaccatctctacggtgaagcatggtggtggaagcatcatgctgtggggacgtttttcagcagcagggactgggaaactagtcaggatcgagggaaagatgaacagagcaaagtacagagagatccttgatgaaaacctgctccagagcgctcagtacctcagactggtgcgaaggttcaccttccaacaggacaacgaccctaagcacacagccaaaacaacgcaggagtggcttcgggacaagtctctgaatgtccttgagtggcccagccagagcccggacttgaatccgatctaacatctctggagaggccctgaaaatagctgtgcagcgacgctccccatccaacctgacaggagacgatctgcagagaagaatgggagaaactctccaaatacaggtgtgccaagcttgtagcgtcatacccaagaagtcttgaggctgtaatcgctgccaatggtgcttcaacaaggttgaacaaggtactgagtaaagggtctgaatactttttaatgtctaaaaacctgtttttgctttgtcataagggggtattgtgtttagactgatgaggggaaaacacattttaatcaattttataataatgctgtaatgtaacaaaatgtggagaaaggggtctgaatactttccaaatacactgtatatGTCTACCTAAATGACCTCATactcctgcacatcaactcagtactggtcagggtcaattccagtcaattcaggaagtacattgAAATTCCAATGGCAATTATCCTCAATACTTTTCAATTAGGAAAATGTgtcattggaatttggtttactttctgaattgactggaatttaaatggaattgactccAGCCCTGGTGCCCCATgaatatagccaagttatcactACTCATTGTGTATTGATTCCTTGTGTAATTATTTttctatgtttctctctgcattgttgggaagggcccataagtaagcatttcactgttagtctacaactgttgtttacgaagcatgtgacaaatacaatttgacatGATTTTTGGATCTGCCTGTCTCGTGCCGAAGGAGGAAACAGGAGCTGTCCATGTGTGGAGCAGGCATGGGAGCCCCAGCCCCGTACCCCCATACCACAGCAGATCAGGGGTTACAGGTGAGGTGAGACAGGAGGGTTAAGCCAGGTAAGCCCACGCATTCCCCCACACATCTACACATACCACCAGTTGCCACAGCAAAGGAGGGCCGCTGGAATACTGTTACATGGCTACTACCATaaaattaggaattagaataatTTAATCGGATCTCAATGGCTACTGCCATCAAAGAGGACTTGTTCACATACGGTACAGTAGAATGGGTTGTACACTGTACAGTAAAAGAACAGCTGAGGCTATGCCGATTGgtcgtccacacacacacacacaaggcagaGCGGGAACTATGGTCTGGTATTCTGTCCTAAGATCAGATGTTAAACTCATAATCAGGCTGTTACACGTTCCCTAAGACCTCTTGATAAAAGCTAACGCGTCTGCCATTTGTTCCATGTGGGAGGCCAAAGCTCATCTTTTCTTGGCTTTTCCCTACTGAGCAGAATTCCTGTTCAAATCATTCCATACTACTCTCACACAGTACTAACAGCATGCCTTCATCACATTTAACTGACTACTACCAGGCAGTCTTTTCTTGTTGATACAGATTATGTCGCAGATTCAACGCAACATCAAGCTCTTCACTACAACGTTAGAGTGCAGAAATCAGAATATACTTAACACGCGCATAGAGCGAAGGTTTTGGAGATCCTGGCAGATGGAGACGGTGTGAAGTGCTCTGTTTGTCATATTGAGATGATTATCGAACTTTTCTTCACGTCTTCATCCATTGATTAGTGTTCATCTGAGTCAAATCCATATAGGCAGATTGTATCCCAACACAAATGTCAGGAGATATTACCAAGCCATATGGCGCTATTCTCAATGACTGCACTTAGAGACCAGATTGCAGGAAAGATGAAAAAAATCGatacagaaaaaaaacacatttgaaatgATTTGCTCTATCCTTGATTGACCCATGTTGATGTTTTCCTCCCGTGGTgggaaagagggggatggaggggtggattggggagggatgaagagagggaacTGGACTCTCTGCAGGGCTACAGAGGAAAGGTCCGCTGTGATCTAAACAGAAACCAAAGATGAGGTgtgggagaggagcgagggagagaggtagagagggcaCGAGGGGGAGTGGTA

Function

NR:

description
PREDICTED: zinc finger protein 135-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1920693 True 5711 TUCP 0.46 2 26462194 26467953

Neighbor

gene id symbol gene type direction distance location
g6pc3 g6pc3 coding upstream 54780 26405112 ~ 26407414 (+)
tmem101 tmem101 coding upstream 73910 26383505 ~ 26388284 (+)
sgca LOC106589632 coding upstream 187213 26263059 ~ 26284385 (+)
LOC110499247 LOC106589631 coding upstream 226636 26230145 ~ 26235558 (+)
si:ch211-216b21.2 LOC106589629 coding upstream 411283 26003272 ~ 26050911 (+)
LOC110499256 LOC106589642 coding downstream 164142 26632095 ~ 26639269 (+)
LOC110499259 LOC106589644 coding downstream 186631 26654584 ~ 26656111 (+)
LOC110498782 LOC105021192 coding downstream 315157 26783110 ~ 26785166 (+)
si:zfos-1056e6.1 LOC105021192 coding downstream 327221 26795174 ~ 26802125 (+)
dld LOC100380662 coding downstream 406513 26874466 ~ 26880268 (+)
G1678907 NA non-coding upstream 52538 26370687 ~ 26409656 (+)
G1678910 NA non-coding upstream 68821 26388963 ~ 26393373 (+)
G1678925 NA non-coding upstream 87055 26373766 ~ 26375139 (+)
G1678889 NA non-coding upstream 128241 26333738 ~ 26333953 (+)
G1678881 NA non-coding upstream 140084 26321696 ~ 26322110 (+)
G1679041 NA non-coding downstream 101480 26569433 ~ 26569746 (+)
G1679042 NA non-coding downstream 101866 26569819 ~ 26570088 (+)
G1679044 NA non-coding downstream 106395 26574348 ~ 26574588 (+)
G1679046 NA non-coding downstream 111480 26579433 ~ 26579713 (+)
G1679056 NA non-coding downstream 126449 26594402 ~ 26595350 (+)
G1677738 NA other upstream 820580 25636691 ~ 25641614 (+)
G1677419 LOC100194703 other upstream 1378917 25082664 ~ 25083277 (+)
faap100 faap100 other upstream 2880762 23576429 ~ 23582556 (+)
LOC110499192 LOC106589579 other upstream 3204125 23252800 ~ 23269058 (+)
LOC110513322 rsl1d1 other upstream 4502567 21936590 ~ 21959627 (+)
G1679135 NA other downstream 232439 26700392 ~ 26775680 (+)
G1679823 NA other downstream 616473 27084426 ~ 27087463 (+)
G1680230 NA other downstream 907401 27375354 ~ 27375819 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G19963 NA non-coding CI01000001 null 13198160 ~ 13198366 (+)
striped catfish (Pangasianodon hypophthalmus) G18909 LOC108268894,LOC108261257,LOC108273545,LOC108273219 non-coding NC_047595.1 CM018541.1 34715874 ~ 34716739 (-)
bowfin (Amia calva) G18084 NA non-coding CM030122.1 CM030122.1 44116966 ~ 44201038 (+)