G1679815


Basic Information

Item Value
gene id G1679815
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27032252 ~ 27032520 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1921622
ggttcctctcctagttcgggcggcgttcggcatcaccggtcttctagccattgtcgatccacttttcattttccatttgttatgtcttgttttcctacacacctggttttcatttccctcattaattgttgtgtatttaaacctctgttcccccccatgtctttgtgtggaattgtttgttgtagtgcttgtgcacatgtttaCTGGTGCGcatcgggttttgtacccatgtttgTTATTTCtttatgccgttggttttgcaattaaac

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1921622 True 269 lncRNA 0.43 1 27032252 27032520

Neighbor

gene id symbol gene type direction distance location
LOC110499271 LOC106589655 coding upstream 19641 27005405 ~ 27012611 (+)
LOC110499270 LOC106589653 coding upstream 53605 26973150 ~ 26978647 (+)
LOC110499269 LOC106589654 coding upstream 59760 26970021 ~ 26972492 (+)
dld LOC100380662 coding upstream 151984 26874466 ~ 26880268 (+)
si:zfos-1056e6.1 LOC105021192 coding upstream 230127 26795174 ~ 26802125 (+)
LOC110499272 rab4a coding downstream 29765 27062285 ~ 27068808 (+)
LOC110499274 urb2 coding downstream 67250 27099770 ~ 27132840 (+)
galnt2 LOC106589660 coding downstream 116873 27149393 ~ 27241856 (+)
cog2 cog2 coding downstream 248324 27280844 ~ 27292092 (+)
phactr2 LOC106589662 coding downstream 274723 27307243 ~ 27364103 (+)
G1679786 NA non-coding upstream 35514 26995047 ~ 26996738 (+)
G1679307 NA non-coding upstream 51021 26981002 ~ 26981231 (+)
G1679285 NA non-coding upstream 72214 26959522 ~ 26960038 (+)
G1679280 NA non-coding upstream 101039 26930945 ~ 26931213 (+)
G1679269 NA non-coding upstream 113518 26918515 ~ 26918734 (+)
G1679810 NA non-coding downstream 6599 27039119 ~ 27039358 (+)
G1679829 NA non-coding downstream 11772 27044292 ~ 27044699 (+)
G1679832 NA non-coding downstream 13803 27046323 ~ 27046560 (+)
G1679833 NA non-coding downstream 15465 27047985 ~ 27050808 (+)
G1679837 NA non-coding downstream 23787 27056307 ~ 27056636 (+)
G1679135 NA other upstream 256572 26700392 ~ 26775680 (+)
LOC110499259 LOC106589644 other upstream 376141 26654584 ~ 26656111 (+)
LOC110499256 LOC106589642 other upstream 399054 26632095 ~ 26639269 (+)
G1678963 NA other upstream 564299 26462194 ~ 26467953 (+)
G1677738 NA other upstream 1390638 25636691 ~ 25641614 (+)
G1679823 NA other downstream 51906 27084426 ~ 27087463 (+)
G1680230 NA other downstream 342834 27375354 ~ 27375819 (+)
G1681180 NA other downstream 1684841 28717361 ~ 28726495 (+)
G1681792 NA other downstream 1745486 28778006 ~ 28778409 (+)
lhcgr lhr other downstream 2424708 29437357 ~ 29458499 (+)

Expression


Co-expression Network