G1679833


Basic Information

Item Value
gene id G1679833
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27047985 ~ 27050808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1921651
ccagtcatgaagaccaggatccagttgcagatggaggtgtttattcccagggtccttagtttagtgatgagctttgagggcactatggtattgaatgctgagctgtagtcaatgaatagcattctcacataggtgttccttctgtccaggtgggaaagggcagtgtggagtgcaatagagattgcatcatccatggatcttttggggcggtataTACAAATTggggtgttaatgtgagccatgactagcctttcgaagcacttcaggctacagatgtgagtgctacgggttggtcgtcatttaggcaggttaccttggtgttcttgggcacagggactatggtggtctgcttaaaacatgttgttattacagactcggtcagggacagtgtgaaaatatcagtgaag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1921651 True 407 lncRNA 0.46 2 27047985 27050808

Neighbor

gene id symbol gene type direction distance location
LOC110499271 LOC106589655 coding upstream 35374 27005405 ~ 27012611 (+)
LOC110499270 LOC106589653 coding upstream 69338 26973150 ~ 26978647 (+)
LOC110499269 LOC106589654 coding upstream 75493 26970021 ~ 26972492 (+)
dld LOC100380662 coding upstream 167717 26874466 ~ 26880268 (+)
si:zfos-1056e6.1 LOC105021192 coding upstream 245860 26795174 ~ 26802125 (+)
LOC110499272 rab4a coding downstream 11477 27062285 ~ 27068808 (+)
LOC110499274 urb2 coding downstream 48962 27099770 ~ 27132840 (+)
galnt2 LOC106589660 coding downstream 98585 27149393 ~ 27241856 (+)
cog2 cog2 coding downstream 230036 27280844 ~ 27292092 (+)
phactr2 LOC106589662 coding downstream 256435 27307243 ~ 27364103 (+)
G1679832 NA non-coding upstream 1425 27046323 ~ 27046560 (+)
G1679829 NA non-coding upstream 3286 27044292 ~ 27044699 (+)
G1679810 NA non-coding upstream 8627 27039119 ~ 27039358 (+)
G1679815 NA non-coding upstream 15465 27032252 ~ 27032520 (+)
G1679786 NA non-coding upstream 51247 26995047 ~ 26996738 (+)
G1679837 NA non-coding downstream 5499 27056307 ~ 27056636 (+)
G1679862 NA non-coding downstream 42151 27092959 ~ 27093174 (+)
G1679880 NA non-coding downstream 191703 27242511 ~ 27248194 (+)
G1679954 NA non-coding downstream 248907 27299715 ~ 27299952 (+)
G1679956 NA non-coding downstream 250002 27300810 ~ 27301075 (+)
G1679135 NA other upstream 272305 26700392 ~ 26775680 (+)
LOC110499259 LOC106589644 other upstream 391874 26654584 ~ 26656111 (+)
LOC110499256 LOC106589642 other upstream 414787 26632095 ~ 26639269 (+)
G1678963 NA other upstream 580032 26462194 ~ 26467953 (+)
G1677738 NA other upstream 1406371 25636691 ~ 25641614 (+)
G1679823 NA other downstream 33618 27084426 ~ 27087463 (+)
G1680230 NA other downstream 324546 27375354 ~ 27375819 (+)
G1681180 NA other downstream 1666553 28717361 ~ 28726495 (+)
G1681792 NA other downstream 1727198 28778006 ~ 28778409 (+)
lhcgr lhr other downstream 2406420 29437357 ~ 29458499 (+)

Expression


Co-expression Network