G1679823


Basic Information

Item Value
gene id G1679823
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27084426 ~ 27087463 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1921636
CATATTCAGCATGGAAATCCTCAACATACCATGCATTCGAGTGACCACGACTATTGGACTGAAGGCCTATTGGTTTATTGTGTGATGATCATGTTATGTGCTTTACAACATATTGCGGCATTATGATTATAAAACAGACATATATCAAAATACCAAATAATGGACTTTAATAACTTAGTATTTATGTACATTTACATTCACATGTTGAATAATAACATGTCATGTCTCATTCTTGTTGATGCTGGTTCACATTTGCAGATTTTCTTTCCAGATAACACACGGTTACAAAAACAGTCCAGTGACAACATTGTGTTGTTCCTCTTGGGGATCCAGAGCAAACAGACGCAGGAGATGATACATTTAGAAGCACTTGCGGTGGACAATGCTGGGGCCTGCCTCGTCGTATTCCTGCTTGGTGATCCACATAGCCTGGAAAGTGGACAGGGAAGCCAGGATGGAGCCACCGATCCAGACGGAGTATTTACGCTCAGGTGGGGCAATGATCTATAGAGAAAGAAGTTGAGTATGAGTAAAACCCATTACATATTTTTATGAAGGttttattgttaaaaaaaaaaatgtttattggAAGGTATAAATACGAATAGTGTTATTGGGTTGTCATATATGTCATACCTTGATCTTCATGGTGCTGGGTGCCAGGGCGGTGATCTCCTTTTGCATACGGTCAGCAATACCAGGGTACATGGTGGTACCACCGGACAGGACATTGTTGGCATACAGGTCCTTACGGATGTCAATGTCGCACTTCATGATGCTGTTGTAGGCGGTCTCGTGAATACCCGCAGACCATACCAATGAATGAAGGCTGGAAGAGGGTCTCTGGGCAACGGAAACGCTCGTTACCGATGGTGATGACCTGACCATCGGGAAGCTCATAGCTCTTctcaagggaggaggaggaggcggcggTGGCCATCTCATTCTCGAAGTCCAGAGCCAcatagcacagcttctccttgATGTCACGCACGATCTCACGCTCGGCGTTGTGACGAAAGAGTAGCCACGCTCGGTGAGgattttcatgaggtagtcagtcagATCGCGACCAGCCAAATCCAGACGCATGATGGCGTGGGGAAGAGCATAACCCTCATAGATGGGTACGTTGTGGGTCACACCATCACCGGAGTCCAGCACAATACCTTTAACACAAACAAAAACGTAAATATTCAGTTGACAAAAACTCATAGTATAGACACATGGTAGGCCACACGTAGCCGACACGTTGTTTTAAGTTAATTGTTTATGAGTAAACGCTGCATTCCATACCAGTGGTACGACCGGAGGCGTACAGAGACAGCACAGCCTGGATCGCAACATACATGGCGGGGACGTTGAATGTCTCAAACATGATCTGAGTCATCTTTTCACGGTTAGCCTTGGGGTTCAGGGGGGCCTCAGTGAGCAGAGTGGGATGCTCCTCGGGGGCCACACGCAGCTCGTTGTAGAAGGTGTGGTGCCAGATCTTCTCCATATCATCCCAGTTAGTGATGATACCGTGCTCGATGGGGTACTTAAGAGTAAGGATACCTCTCTTGCTCTGAGCTTCATCTCCTACGTAGGAGTCCTTCTGACCCATACCGACCATGACACCCTGGAGGAAAGACGAGACTCATTGGCCTATATGGTGGCATAGCCTAATCCCAGTCAAAACATGACGTGGGAACGCATAGATAGATAATGGATAATAAAGGGGCAAATTGCGTAATATGGGCCTGTTGCAGGCGTCTTCGGAGTGCAGATCATACCTGGTGACGAGGGCGGCCAACGATGGAGGGGAAGACAGCCCTGGGGGCGTCATCACCGGCGAACCCAGCCTTCACAAGGCCGGAGCCGTTGTCGCACACCAGAGCTGTAGTCTCGTCGTCGTCACACATCTTGAGTTCTTAAtaatacacatacacaaataaCTATCATATTTCTCCAGAGTGCACGCACACATGCCGGAGCTGTGGAACACATTAGAACAACATAACTCACGATGCACACCTAAACGTTGTCTAACACTAAATATTGTACAAGTCACGGATGACAGTTTAACAGCCTGGTTGAGTGAGAAAATCATTGCATTTACTCAAAAGGTTGTTGCAAGTTAATTCGCTACTATGTCGAAATTATATTGAATTGAGTTTAGGCACAAGTCATTGGTTAGATTTACGCATTGATATTGTCACCTGTTGAATACCCTACTGGTTATATTATGCATGTTACACACTCATTTGTTGTATGAGTGAAATTATCTATCCAATTAAAATGCATTGTTTCTGAACTCCATGAAACCACTCTAATTTCTTTCAATAACACAATGCTGTTAAATCGTTAGGTAGCCAACCCAGGCAATTTGGCCAGTTGTTTGTTTAAATTAAGTCTACAAACAAGGCCAAGGGTTTATCAAGTAATTTTACAGAAAGGAACATTTGTATTTTATCTCTCTTCTACTCTTCCGCAATTTGTTTAATTTCTGTAGCCTATACAATAAATCCATGCGTAATTGGCATGCGCAATTCCTTCAGGTGAAGAGACTAACATCACTATCTGTGTATTTTATCATATTAATTGGCTCCGCAGATGTAAAATAAAAAGAAGGGTACATCCTTTGATATCAGTCCATGAATAGTAGATCCAGTCTTTGAGGTTTGGGTTGATTCCATTTTTCTTACCTTTGGTGGTGTCTGTCTCAGATTAAGCTCAGAAGGCGGAAAGCAACTGCTGCTGGATCGAGCTATAGTGGCACTTCAAACCTTATATACTCACCGCGTTCGGCCTATTTCCCT

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: actin, aortic smooth muscle

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1921636 True 2801 TUCP 0.44 3 27084426 27087463

Neighbor

gene id symbol gene type direction distance location
LOC110499272 rab4a coding upstream 15618 27062285 ~ 27068808 (+)
LOC110499271 LOC106589655 coding upstream 71815 27005405 ~ 27012611 (+)
LOC110499270 LOC106589653 coding upstream 105779 26973150 ~ 26978647 (+)
LOC110499269 LOC106589654 coding upstream 111934 26970021 ~ 26972492 (+)
dld LOC100380662 coding upstream 204158 26874466 ~ 26880268 (+)
LOC110499274 urb2 coding downstream 12307 27099770 ~ 27132840 (+)
galnt2 LOC106589660 coding downstream 61930 27149393 ~ 27241856 (+)
cog2 cog2 coding downstream 193381 27280844 ~ 27292092 (+)
phactr2 LOC106589662 coding downstream 219780 27307243 ~ 27364103 (+)
rgs17 LOC106589666 coding downstream 406965 27494428 ~ 27534484 (+)
G1679837 NA non-coding upstream 27790 27056307 ~ 27056636 (+)
G1679833 NA non-coding upstream 33618 27047985 ~ 27050808 (+)
G1679832 NA non-coding upstream 37866 27046323 ~ 27046560 (+)
G1679829 NA non-coding upstream 39727 27044292 ~ 27044699 (+)
G1679810 NA non-coding upstream 45068 27039119 ~ 27039358 (+)
G1679862 NA non-coding downstream 5496 27092959 ~ 27093174 (+)
G1679880 NA non-coding downstream 155048 27242511 ~ 27248194 (+)
G1679954 NA non-coding downstream 212252 27299715 ~ 27299952 (+)
G1679956 NA non-coding downstream 213347 27300810 ~ 27301075 (+)
G1679957 NA non-coding downstream 213739 27301202 ~ 27301521 (+)
G1679135 NA other upstream 308746 26700392 ~ 26775680 (+)
LOC110499259 LOC106589644 other upstream 428315 26654584 ~ 26656111 (+)
LOC110499256 LOC106589642 other upstream 451228 26632095 ~ 26639269 (+)
G1678963 NA other upstream 616473 26462194 ~ 26467953 (+)
G1677738 NA other upstream 1442812 25636691 ~ 25641614 (+)
G1680230 NA other downstream 287891 27375354 ~ 27375819 (+)
G1681180 NA other downstream 1629898 28717361 ~ 28726495 (+)
G1681792 NA other downstream 1690543 28778006 ~ 28778409 (+)
lhcgr lhr other downstream 2369765 29437357 ~ 29458499 (+)
LOC110499316 LOC106589729 other downstream 2484972 29572397 ~ 29588171 (+)

Expression


Co-expression Network