G1680522


Basic Information

Item Value
gene id G1680522
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27635730 ~ 27636797 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1922416
taggaagagtctttggtggttccaaacttcttccatttaagaatgatggaggccattgtgttcttggggatcttcaatgctacataattttttttgtacccttccccagatctgtttctcAACACAATCATtctagggtattgtgtgtagattgaggggagaaaataattgaatccattttagaaaaaggctgtaccgttacaaaatgtggagaaaattgaaggggtctgaatagtttctgaatgcactgtatactattTATATCTAATATaagcaaattcaattgattattGTAATTACTATGATATTAAATACAGATTTGAAAGAGCAAACAAATTGTTATGCTTGCAGGGATGTCTGAAGGACATTTTCATGTCAATGAAATTCTACCATAGAGGAAGGGAAGTAGGTATTTCAGCAAAGCCAAACAAATAGTATTGAATGAATAGTGGAGCAGATCTTAACAGGAAAGACCTTAACTGCTTTTATTGAAATGCTACCTCACAaaggtactactactactaaataaggAAGAAACGCCGGATGTCTGTTTGCTTTCATTTTACATTTTAAGTTATCACCTGCTCGTTCCTCTAAATGGCATGGGCAGACTGTGCATCAGGAAGAGGCCCCTAGACTAGTTTCCAGTAAGAGGAGACAATTCCTCTGCCTTTAATTACTACCAGTGAAAAGTAAATCAGATATTCCCATTGTTCTAGTTCTGAGAATGTATGTGAAGTGGGAGCCTCAGGGCCATTACAAAAGCCTGGCTCTCACGGGGAGCAGGTGTAAATCaacaggaggagaaaggagggccGCAGTGAAACAGTGATGGGATAGAACAGCTGGGGATGCCCCAAAATGGCTCCAAGGCAACCACGTCAAAGGTTGTCAGGATACTTTCACAAAAACACTCTTCTTAACTCTTTGTATGCCTGCACATGATTTGTTTCTTCTTGAGAAAACTTCTAAATTACCATTGTTGTCACACAAGGATATTcataaaatatactgaacaaaaatataaatgtaaagtgttggtttcatgagcttaaataaaatatccca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1922416 True 1068 lncRNA 0.38 1 27635730 27636797
Loading

Neighbor

gene id symbol gene type direction distance location
il22ra2 il22bp coding downstream 3101 27628917 ~ 27632629 (-)
pcnx2 LOC106589667 coding downstream 26474 27581482 ~ 27609256 (-)
oprm1 LOC106589663 coding downstream 185000 27418452 ~ 27450730 (-)
sf3b5 sf3b5 coding downstream 251129 27381985 ~ 27384608 (-)
agt agt coding downstream 337454 27292336 ~ 27298276 (-)
ifngr1l ifngr1 coding upstream 5432 27642229 ~ 27660278 (-)
LOC110499284 NA coding upstream 47026 27683823 ~ 27690953 (-)
LOC110499285 olig3 coding upstream 112052 27748849 ~ 27750461 (-)
LOC110499286 perp coding upstream 169072 27805869 ~ 27812533 (-)
fa36a fa36a coding upstream 224055 27860741 ~ 27864828 (-)
G1680545 NA non-coding downstream 80883 27546795 ~ 27554847 (-)
G1680432 NA non-coding downstream 257503 27377993 ~ 27378227 (-)
G1680430 NA non-coding downstream 260017 27375353 ~ 27375713 (-)
G1680222 NA non-coding downstream 264820 27370611 ~ 27370910 (-)
G1680221 NA non-coding downstream 265613 27369917 ~ 27370117 (-)
G1680518 LOC106589675 non-coding upstream 39855 27676652 ~ 27683790 (-)
G1680599 NA non-coding upstream 51868 27688665 ~ 27688896 (-)
G1680608 NA non-coding upstream 67459 27704256 ~ 27704497 (-)
G1680613 NA non-coding upstream 72142 27708939 ~ 27709266 (-)
G1681215 NA non-coding upstream 156349 27793146 ~ 27793956 (-)
G1680171 cog2 other downstream 354122 27280823 ~ 27283995 (-)
G1680017 NA other downstream 590436 27044782 ~ 27045294 (-)
si:ch1073-13h15.3 LOC107387676 other downstream 1273449 26360190 ~ 26365511 (-)
fbxw10 cdrt1 other downstream 1425851 26208532 ~ 26229024 (-)
G1681623 NA other upstream 836488 28473285 ~ 28474025 (-)
G1681658 NA other upstream 898498 28535295 ~ 28535809 (-)
LOC110499315 LOC106589727 other upstream 1904518 29541315 ~ 29571033 (-)

Expression

G1680522 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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G1680522 Expression in each Bioproject

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G1680522 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network