G1680411


Basic Information

Item Value
gene id G1680411
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27666381 ~ 27666624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1922289
ctccctgtctgagtctgtaataccaacatgtttcaggcagaccaccatagtccctgtgcccaagaacactaaaataacctacctaaatgactaccgacccgtagcactcgcatctgtagccatgaaatgctttgaaaggctggtcatggctcgcatcaacaccattaccccagaaaccctagacccactccaatttgcataccgcaccaacagatccacatataATGCtatctctattgcattc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1922289 True 244 lncRNA 0.47 1 27666381 27666624

Neighbor

gene id symbol gene type direction distance location
map3k21 LOC106589668 coding upstream 39596 27610623 ~ 27626785 (+)
rgs17 LOC106589666 coding upstream 131897 27494428 ~ 27534484 (+)
phactr2 LOC106589662 coding upstream 302278 27307243 ~ 27364103 (+)
cog2 cog2 coding upstream 374289 27280844 ~ 27292092 (+)
galnt2 LOC106589660 coding upstream 424525 27149393 ~ 27241856 (+)
LOC110499283 LOC106589675 coding downstream 9969 27676593 ~ 27683907 (+)
LOC100136337 tnfaip3 coding downstream 104118 27770742 ~ 27786519 (+)
arfgef3 arfgef3 coding downstream 147765 27814389 ~ 27858095 (+)
lhb LOC100135809 coding downstream 198244 27864868 ~ 27866512 (+)
adss2 LOC106589688 coding downstream 277143 27943767 ~ 27969322 (+)
G1680395 NA non-coding upstream 26577 27639339 ~ 27639804 (+)
G1680394 NA non-coding upstream 29898 27635801 ~ 27636483 (+)
G1680393 NA non-coding upstream 31276 27634651 ~ 27635105 (+)
G1680392 NA non-coding upstream 32312 27633695 ~ 27634069 (+)
G1680391 NA non-coding upstream 32777 27633242 ~ 27633604 (+)
G1680412 NA non-coding downstream 148 27666772 ~ 27667080 (+)
G1680415 NA non-coding downstream 4397 27671021 ~ 27671257 (+)
G1680420 NA non-coding downstream 7416 27674040 ~ 27674484 (+)
G1680421 NA non-coding downstream 8305 27674929 ~ 27675280 (+)
G1680423 NA non-coding downstream 22347 27688971 ~ 27693140 (+)
G1680230 NA other upstream 290562 27375354 ~ 27375819 (+)
G1679823 NA other upstream 578918 27084426 ~ 27087463 (+)
G1679135 NA other upstream 890701 26700392 ~ 26775680 (+)
LOC110499259 LOC106589644 other upstream 1010270 26654584 ~ 26656111 (+)
LOC110499256 LOC106589642 other upstream 1033183 26632095 ~ 26639269 (+)
G1681180 NA other downstream 1050737 28717361 ~ 28726495 (+)
G1681792 NA other downstream 1111382 28778006 ~ 28778409 (+)
lhcgr lhr other downstream 1790604 29437357 ~ 29458499 (+)
LOC110499316 LOC106589729 other downstream 1905811 29572397 ~ 29588171 (+)
G1686317 LOC106589755 other downstream 4987730 32654354 ~ 32661648 (+)

Expression


Co-expression Network