Gene
RNA
| Item | Value |
|---|---|
| gene id | G1680415 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 27671021 ~ 27671257 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1922293 | True | 237 | lncRNA | 0.32 | 1 | 27671021 | 27671257 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| map3k21 | LOC106589668 | coding | upstream | 44236 | 27610623 ~ 27626785 (+) |
| rgs17 | LOC106589666 | coding | upstream | 136537 | 27494428 ~ 27534484 (+) |
| phactr2 | LOC106589662 | coding | upstream | 306918 | 27307243 ~ 27364103 (+) |
| cog2 | cog2 | coding | upstream | 378929 | 27280844 ~ 27292092 (+) |
| galnt2 | LOC106589660 | coding | upstream | 429165 | 27149393 ~ 27241856 (+) |
| LOC110499283 | LOC106589675 | coding | downstream | 5336 | 27676593 ~ 27683907 (+) |
| LOC100136337 | tnfaip3 | coding | downstream | 99485 | 27770742 ~ 27786519 (+) |
| arfgef3 | arfgef3 | coding | downstream | 143132 | 27814389 ~ 27858095 (+) |
| lhb | LOC100135809 | coding | downstream | 193611 | 27864868 ~ 27866512 (+) |
| adss2 | LOC106589688 | coding | downstream | 272510 | 27943767 ~ 27969322 (+) |
| G1680412 | NA | non-coding | upstream | 3941 | 27666772 ~ 27667080 (+) |
| G1680411 | NA | non-coding | upstream | 4397 | 27666381 ~ 27666624 (+) |
| G1680395 | NA | non-coding | upstream | 31217 | 27639339 ~ 27639804 (+) |
| G1680394 | NA | non-coding | upstream | 34538 | 27635801 ~ 27636483 (+) |
| G1680393 | NA | non-coding | upstream | 35916 | 27634651 ~ 27635105 (+) |
| G1680420 | NA | non-coding | downstream | 2783 | 27674040 ~ 27674484 (+) |
| G1680421 | NA | non-coding | downstream | 3672 | 27674929 ~ 27675280 (+) |
| G1680423 | NA | non-coding | downstream | 17714 | 27688971 ~ 27693140 (+) |
| G1680611 | NA | non-coding | downstream | 36975 | 27708232 ~ 27708458 (+) |
| G1680647 | NA | non-coding | downstream | 62092 | 27733349 ~ 27734096 (+) |
| G1680230 | NA | other | upstream | 295202 | 27375354 ~ 27375819 (+) |
| G1679823 | NA | other | upstream | 583558 | 27084426 ~ 27087463 (+) |
| G1679135 | NA | other | upstream | 895341 | 26700392 ~ 26775680 (+) |
| LOC110499259 | LOC106589644 | other | upstream | 1014910 | 26654584 ~ 26656111 (+) |
| LOC110499256 | LOC106589642 | other | upstream | 1037823 | 26632095 ~ 26639269 (+) |
| G1681180 | NA | other | downstream | 1046104 | 28717361 ~ 28726495 (+) |
| G1681792 | NA | other | downstream | 1106749 | 28778006 ~ 28778409 (+) |
| lhcgr | lhr | other | downstream | 1785971 | 29437357 ~ 29458499 (+) |
| LOC110499316 | LOC106589729 | other | downstream | 1901178 | 29572397 ~ 29588171 (+) |
| G1686317 | LOC106589755 | other | downstream | 4983097 | 32654354 ~ 32661648 (+) |
